5UL1 Transferase Signaling Protein Inhibitor date Jan 23, 2017
title The Co-Structure Of 3-Amino-6-(4-((1-(Dimethylamino)Propan-2 Sulfonyl)Phenyl)-N-Phenylpyrazine-2-Carboxamide And A Ratio Designed Pi3k-Alpha Mutant That Mimics Atr
authors M.S.Knapp, R.A.Elling, M.Mamo
compound source
Molecule: Phosphatidylinositol 4,5-Bisphosphate 3-Kinase Ca Subunit Alpha Isoform;
Chain: A
Synonym: Ptdins-3-Kinase Subunit Alpha,Phosphatidylinositol Bisphosphate 3-Kinase 110 Kda Catalytic Subunit Alpha,P110a Phosphoinositide-3-Kinase Catalytic Alpha Polypeptide, Serinethreonine Protein Kinase Pik3ca;
Ec: 2.7.1.153,2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3ca
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Phosphatidylinositol 3-Kinase Regulatory Subunit
Chain: B
Synonym: Ptdins-3-Kinase Regulatory Subunit Alpha, Phosphatidylinositol 3-Kinase 85 Kda Regulatory Subunit Alp 3-Kinase Regulatory Subunit P85-Alpha;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3r1, Grb1
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.431 108.814 136.576 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 8DY enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein serine/threonine kin...
  • protein kinase activator act...


  • Primary referenceRationally Designed PI3Kalpha Mutants to Mimic ATR and Their Use to Understand Binding Specificity of ATR Inhibitors., Lu Y, Knapp M, Crawford K, Warne R, Elling R, Yan K, Doyle M, Pardee G, Zhang L, Ma S, Mamo M, Ornelas E, Pan Y, Bussiere D, Jansen J, Zaror I, Lai A, Barsanti P, Sim J, J Mol Biol. 2017 Apr 20. pii: S0022-2836(17)30181-X. doi:, 10.1016/j.jmb.2017.04.006. PMID:28433539
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk]
  • Biological Unit Coordinates (5ul1.pdb1.gz) 313 Kb
  • LPC: Ligand-Protein Contacts for 5UL1
  • CSU: Contacts of Structural Units for 5UL1
  • Structure Factors (520 Kb)
  • Retrieve 5UL1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UL1 from S2C, [Save to disk]
  • Re-refined 5ul1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UL1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UL1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ul1_A] [5ul1_B] [5ul1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UL1
  • Community annotation for 5UL1 at PDBWiki (http://pdbwiki.org)

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