5WVK	Hydrolase	date	6-1 20, 1998
authors	Z.Ding, Y.Cong
compound		source
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 474.466 474.466 474.466 90.00 90.00 90.00
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component 1, b proteasome core complex, bet... 2, i proteasome core complex, bet... D, n E, m proteasome core complex, alp... F, l proteasome core complex, alp... H proteasome-activating ATPase... I proteasome-activating ATPase... J K proteasome-activating ATPase... L M N enzyme regulator activity O P Q R enzyme regulator activity S enzyme regulator activity T U V Lys63-specific deubiquitinas... W X endopeptidase activator acti... Y Z enzyme regulator activity a, 7 proteasome core complex, bet... c, A proteasome core complex, alp... d, C proteasome core complex, alp... e, 6 f, 5 proteasome core complex, bet... g, 4 endopeptidase activator acti... proteasome core complex, bet... h, 3 endopeptidase activator acti... proteasome core complex, bet... j, B proteasome core complex, alp... k, G proteasome core complex, alp...
Primary reference	High-resolution cryo-EM structure of the proteasome in complex with ADP-AlFx., Ding Z, Fu Z, Xu C, Wang Y, Wang Y, Li J, Kong L, Chen J, Li N, Zhang R, Cong Y, Cell Res. 2017 Mar;27(3):373-385. doi: 10.1038/cr.2017.12. Epub 2017 Jan 20. PMID:28106073

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1822 Kb) [Save to disk] CSU: Contacts of Structural Units for 5WVK Retrieve 5WVK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WVK from S2C, [Save to disk]

View 5WVK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5WVK

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wvk_h] [5wvk_m] [5wvk_g] [5wvk_D] [5wvk_S] [5wvk_W] [5wvk_P] [5wvk_E] [5wvk_M] [5wvk_H] [5wvk_I] [5wvk_C] [5wvk_Z] [5wvk_T] [5wvk_J] [5wvk_F] [5wvk_X] [5wvk_G] [5wvk_k] [5wvk_V] [5wvk_7] [5wvk_2] [5wvk_R] [5wvk_e] [5wvk_N] [5wvk_f] [5wvk_i] [5wvk_6] [5wvk_K] [5wvk_n] [5wvk] [5wvk_4] [5wvk_a] [5wvk_1] [5wvk_Q] [5wvk_l] [5wvk_A] [5wvk_O] [5wvk_5] [5wvk_3] [5wvk_B] [5wvk_c] [5wvk_L] [5wvk_j] [5wvk_U] [5wvk_Y] [5wvk_b] [5wvk_d] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5WVK

Community annotation for 5WVK at PDBWiki (http://pdbwiki.org)

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