5WX9 Dna Binding Protein Dna date Jan 06, 2017
title Crystal Structure Of Aterf96 With Gcc-Box
authors C.Y.Chen, Y.S.Cheng
compound source
Molecule: Ethylene-Responsive Transcription Factor Erf096
Chain: A
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Erf096, At5g43410, Mwf20.11
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Gcc-Box Motif
Chain: B
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_taxid: 3702
Expression_system: Synthetic Construct
Expression_system_taxid: 32630

Molecule: Gcc-Box Motif
Chain: C
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_taxid: 3702
Expression_system: Synthetic Construct
Expression_system_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.206 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.976 81.181 38.999 90.00 120.04 90.00
method X-Ray Diffractionresolution 1.76 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into Arabidopsis ethylene response factor 96 with an extended N-terminal binding to GCC box., Chen CY, Lin PH, Chen KH, Cheng YS, Plant Mol Biol. 2020 Nov;104(4-5):483-498. doi: 10.1007/s11103-020-01052-5. Epub , 2020 Aug 19. PMID:32813232
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (5wx9.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 5WX9
  • Structure Factors (415 Kb)
  • Retrieve 5WX9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WX9 from S2C, [Save to disk]
    • View 5WX9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5WX9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wx9_B] [5wx9_C] [5wx9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WX9
  • Community annotation for 5WX9 at PDBWiki (http://pdbwiki.org)

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