5XQ1 Signaling Protein date Jun 05, 2017
title Structural Basis Of Kindlin-Mediated Integrin Recognition An Activation
authors H.Li, H.Yang, K.Sun, Z.Zhang, C.Yu, Z.Wei
compound source
Molecule: Fermitin Family Homolog 2,Integrin Beta-3
Chain: A, B
Fragment: Unp Residues 773-787
Synonym: Kindlin-2,Pleckstrin Homology Domain-Containing Fa Member 1,Platelet Membrane Glycoprotein Iiia,Gpiiia;
Engineered: Yes
Mutation: Yes
Other_details: Beta3-Integrin Tail Was Fused To The C-Termi Kindlin2
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Fermt2, Plekhc1, Itgb3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_plasmid: Psumo
symmetry Space Group: P 32 2 1
R_factor 0.220 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.973 75.973 387.042 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.95 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of kindlin-mediated integrin recognition and activation., Li H, Deng Y, Sun K, Yang H, Liu J, Wang M, Zhang Z, Lin J, Wu C, Wei Z, Yu C, Proc Natl Acad Sci U S A. 2017 Jul 24. pii: 201703064. doi:, 10.1073/pnas.1703064114. PMID:28739949
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk]
  • Biological Unit Coordinates (5xq1.pdb1.gz) 284 Kb
  • CSU: Contacts of Structural Units for 5XQ1
  • Structure Factors (184 Kb)
  • Retrieve 5XQ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XQ1 from S2C, [Save to disk]
  • Re-refined 5xq1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5XQ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XQ1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xq1_A] [5xq1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XQ1
  • Community annotation for 5XQ1 at PDBWiki (http://pdbwiki.org)

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