5ZEU Ribosome date Feb 28, 2018
title M. Smegmatis Pp State 30s Ribosomal Subunit
authors S.Mishra, T.Ahmed, A.Tyagi, J.Shi, S.Bhushan
compound source
Molecule: 16s Rrna
Chain: a
Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S3
Chain: c
Synonym: Us3

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S5
Chain: e
Synonym: Us5

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S7
Chain: g
Synonym: Us7

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S8
Chain: h
Synonym: Us8

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S9
Chain: I
Synonym: Us9

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S10
Chain: j
Synonym: Us10

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S11
Chain: k
Synonym: Us11

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S12
Chain: l
Synonym: Us12

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S15
Chain: o
Synonym: Us15

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S17
Chain: q
Synonym: Us17

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S18 2
Chain: r
Synonym: Bs18

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S19
Chain: s
Synonym: Us19

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S20
Chain: t
Synonym: Bs20

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: P-Trnafmet
Chain: v

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: 30s Ribosomal Protein S14 Type Z
Chain: n
Synonym: Us14

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S2
Chain: b
Synonym: Us2

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S4
Chain: d
Synonym: Us4

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S6
Chain: f
Synonym: Bs6

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S13
Chain: m
Synonym: Us13

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: 30s Ribosomal Protein S16
Chain: p
Synonym: Bs16

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155

Molecule: Conserved Domain Protein
Chain: u
Synonym: Bs22

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
Gene
Ontology
ChainFunctionProcessComponent
b


c


d


e


f


g


h


i


j


k


l


m


n


o


p


q


r


s


t


Primary referenceStructures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA., Mishra S, Ahmed T, Tyagi A, Shi J, Bhushan S, Sci Rep. 2018 Sep 11;8(1):13587. doi: 10.1038/s41598-018-31850-3. PMID:30206241
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1035 Kb) [Save to disk]
  • Biological Unit Coordinates (5zeu.pdb1.gz) 1026 Kb
  • CSU: Contacts of Structural Units for 5ZEU
  • Retrieve 5ZEU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZEU from S2C, [Save to disk]
  • View 5ZEU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZEU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zeu_t] [5zeu_a] [5zeu_c] [5zeu_n] [5zeu_e] [5zeu_k] [5zeu_q] [5zeu_p] [5zeu_g] [5zeu_d] [5zeu_s] [5zeu_h] [5zeu_i] [5zeu_r] [5zeu_f] [5zeu_j] [5zeu_u] [5zeu_m] [5zeu_v] [5zeu_l] [5zeu_b] [5zeu_o]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZEU
  • Community annotation for 5ZEU at PDBWiki (http://pdbwiki.org)

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