5I49 Transferase date Feb 11, 2016
title Rna Editing Tutase 1 From Trypanosoma Brucei In Complex With Analog Umpnpp
authors S.Thore, L.T.Rajappa
compound source
Molecule: 3' Terminal Uridylyl Transferase
Chain: A
Engineered: Yes
Organism_scientific: Trypanosoma Brucei
Organism_taxid: 5691
Gene: 3' Tutase
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.173 R_Free 0.207
length a length b length c angle alpha angle beta angle gamma
129.380 58.430 66.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 2KH, MG, ZN enzyme
Primary referenceRNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting., Rajappa-Titu L, Suematsu T, Munoz-Tello P, Long M, Demir O, Cheng KJ, Stagno JR, Luecke H, Amaro RE, Aphasizheva I, Aphasizhev R, Thore S, Nucleic Acids Res. 2016 Oct 15. pii: gkw917. PMID:27744351
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5i49.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 5I49
  • CSU: Contacts of Structural Units for 5I49
  • Structure Factors (789 Kb)
  • Retrieve 5I49 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I49 from S2C, [Save to disk]
  • Re-refined 5i49 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I49 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I49
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5i49 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i49] [5i49_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5I49: [ZnF_C2H2 ] by SMART
  • Other resources with information on 5I49
  • Community annotation for 5I49 at PDBWiki (http://pdbwiki.org)

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