5JRE Dna Binding Protein date May 06, 2016
title Crystal Structure Of Nec3po In Complex With Ssdna.
authors J.Gan, J.Zhang
compound source
Molecule: Neq131
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
Organism_scientific: Nanoarchaeum Equitans (Strain Kin4-M)
Organism_taxid: 228908
Strain: Kin4-M
Gene: Neq131
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ssdna
Chain: I, J
Engineered: Yes

Synthetic: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.830 128.200 102.180 90.00 95.22 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ADE, ADZ enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructural basis for single-stranded RNA recognition and cleavage by C3PO., Zhang J, Liu H, Yao Q, Yu X, Chen Y, Cui R, Wu B, Zheng L, Zuo J, Huang Z, Ma J, Gan J, Nucleic Acids Res. 2016 Sep 4. pii: gkw776. PMID:27596600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (525 Kb) [Save to disk]
  • Biological Unit Coordinates (5jre.pdb1.gz) 516 Kb
  • LPC: Ligand-Protein Contacts for 5JRE
  • CSU: Contacts of Structural Units for 5JRE
  • Structure Factors (9145 Kb)
  • Retrieve 5JRE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JRE from S2C, [Save to disk]
  • Re-refined 5jre structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JRE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JRE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jre] [5jre_E] [5jre_D] [5jre_A] [5jre_G] [5jre_B] [5jre_H] [5jre_I] [5jre_C] [5jre_F] [5jre_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JRE
  • Community annotation for 5JRE at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science