5LFW Dna date Jul 04, 2016
title Lambda-[Ru(Phen)2(Dppz)]2+ Bound To A Short Substituted Dna
authors J.P.Hall, C.J.Cardin
compound source
Molecule: Dna (5'-D(Gpcpcpg)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D((Cbr)Pgpgpc)-3')
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 64 2 2
R_factor 0.141 R_Free 0.171
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.340 67.340 35.790 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.28 Å
ligand 5BT, BA, RKP enzyme
Primary referenceGuanine Can Direct Binding Specificity of Ru-dipyridophenazine (dppz) Complexes to DNA through Steric Effects., Hall JP, Gurung SP, Henle J, Poidl P, Andersson J, Lincoln P, Winter G, Sorensen T, Cardin DJ, Brazier JA, Cardin CJ, Chemistry. 2017 Jan 19. doi: 10.1002/chem.201605508. PMID:28105682
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (5lfw.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 5LFW
  • CSU: Contacts of Structural Units for 5LFW
  • Structure Factors (755 Kb)
  • Retrieve 5LFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LFW from S2C, [Save to disk]
  • Re-refined 5lfw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LFW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lfw_C] [5lfw_A] [5lfw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LFW
  • Community annotation for 5LFW at PDBWiki (http://pdbwiki.org)

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