5TOL CRYSTAL STRUCTURE OF BETA-SITE APP-CLEAVING ENZYME 1 COMPLEXED WITH N-(3-((4AS,7AS)-2-AMINO-4,4A,5,6-TETRAHYDRO-7AH-FURO[2,3-D][1,3]THIAZIN-7A-YL)-4-FLUOROPHENYL)-5-BROMO-2-PYRIDINECARBOXAMIDE date
authors Muckelbauer, J.K.
compound source
symmetry
R_factor
R_Free 0.2569
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.51
ligand 7H3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of furo[2,3-d][1,3]thiazinamines as beta amyloid cleaving enzyme-1 (BACE1) inhibitors., Wu YJ, Guernon J, Rajamani R, Toyn JH, Ahlijanian MK, Albright CF, Muckelbauer J, Chang C, Camac D, Macor JE, Thompson LA, Bioorg Med Chem Lett. 2016 Dec 1;26(23):5729-5731. doi:, 10.1016/j.bmcl.2016.10.055. Epub 2016 Oct 20. PMID:27816517
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5tol.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 5TOL
  • CSU: Contacts of Structural Units for 5TOL
  • Structure Factors (1231 Kb)
  • Retrieve 5TOL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TOL from S2C, [Save to disk]
  • Re-refined 5tol structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TOL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TOL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tol_A] [5tol]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TOL
  • Community annotation for 5TOL at PDBWiki (http://pdbwiki.org)

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