5ZLP Ligase date Mar 29, 2018
title Crystal Structure Of Glutamine Synthetase From Helicobacter
authors H.K.Joo, J.Y.Lee
compound source
Molecule: Glutamine Synthetase
Chain: A, B, C, D, E, F, H, J, K, L, G, I
Synonym: Gs,Glutamate--Ammonia Ligase,Glutamine Synthetase Beta;
Ec: 6.3.1.2
Engineered: Yes
Organism_scientific: Helicobacter Pylori (Strain Atcc 70039 26695);
Organism_common: Campylobacter Pylori
Organism_taxid: 85962
Strain: Atcc 700392 26695
Gene: Glna, Hp_0512
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.168 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
234.409 135.167 203.080 90.00 91.61 90.00
method X-Ray Diffractionresolution 2.93 Å
ligand ADP, ATP, MG, P3P, PPQ enzyme Ligase E.C.6.3.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceStructural Analysis of Glutamine Synthetase from Helicobacter pylori., Joo HK, Park YW, Jang YY, Lee JY, Sci Rep. 2018 Aug 3;8(1):11657. doi: 10.1038/s41598-018-30191-5. PMID:30076387
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (917 Kb) [Save to disk]
  • Biological Unit Coordinates (5zlp.pdb1.gz) 907 Kb
  • LPC: Ligand-Protein Contacts for 5ZLP
  • CSU: Contacts of Structural Units for 5ZLP
  • Structure Factors (3112 Kb)
  • Retrieve 5ZLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZLP from S2C, [Save to disk]
  • View 5ZLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZLP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zlp_C] [5zlp_G] [5zlp_E] [5zlp_A] [5zlp_B] [5zlp_D] [5zlp_H] [5zlp_J] [5zlp_K] [5zlp_I] [5zlp_F] [5zlp_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZLP
  • Community annotation for 5ZLP at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science