6HTS | Dna Binding Protein | date | Oct 04, 2018 |
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title | Cryo-Em Structure Of The Human Ino80 Complex Bound To Nucleo | ||||||||||||||||||||||||||||||||||||||||||
authors | R.Ayala, O.Willhoft, R.J.Aramayo, M.Wilkinson, E.A.Mccormack, L.O D.B.Wigley, X.Zhang | ||||||||||||||||||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Ruvb-Like 1 Chain: A, C, E Synonym: 49 Kda Tata Box-Binding Protein-Interacting Protei Tbp-Interacting Protein,54 Kda Erythrocyte Cytosolic Protei Ino80 Complex Subunit H,Nuclear Matrix Protein 238,Nmp 238, Tip49a,Tip60-Associated Protein 54-Alpha,Tap54-Alpha; Ec: 3.6.4.12 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ruvbl1, Ino80h, Nmp238, Tip49, Tip49a Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_variant: Sf9 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Ruvb-Like 2 Chain: B, D, F Synonym: 48 Kda Tata Box-Binding Protein-Interacting Protei Tbp-Interacting Protein,51 Kda Erythrocyte Cytosolic Protei Ino80 Complex Subunit J,Repressing Pontin 52,Reptin 52,Tip4 Associated Protein 54-Beta,Tap54-Beta; Ec: 3.6.4.12 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ruvbl2, Ino80j, Tip48, Tip49b, Cgi-46 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_variant: Sf9 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Chromatin-Remodeling Atpase Ino80 Chain: G Synonym: Hino80,Dna Helicase-Related Ino80 Complex Homolog Helicase-Related Protein Ino80,Ino80 Complex Subunit A; Ec: 3.6.4.- Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ino80, Ino80a, Inoc1, Kiaa1259 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_variant: Sf9 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Actin-Related Protein 5 Chain: H Synonym: Harp5,Sarcoma Antigen Ny-Sar-16 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Actr5, Arp5 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_variant: Sf9 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Histone H3.1 Chain: I, M Synonym: Histone H3a,Histone H3b,Histone H3c,Histone H3 H3f,Histone H3h,Histone H3i,Histone H3j,Histone H3k,Hi H3l; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h3a, H3fa, Hist1h3b, H3fl, Hist1h3c, H3fc, Hist1 H3fb, Hist1h3e, H3fd, Hist1h3f, H3fi, Hist1h3g, H3fh, Hist1 H3fk, Hist1h3i, H3ff, Hist1h3j, H3fj; Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Histone H4 Chain: J, N Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4; Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Histone H2a Type 1-Be Chain: K, O Synonym: Histone H2a.2,Histone H2aa,Histone H2am Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2ab, H2afm, Hist1h2ae, H2afa Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Histone H2b Type 1-J Chain: L, P Synonym: Histone H2b.1,Histone H2b.R,H2br Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2bj, H2bfr Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Ino80 Complex Subunit B Chain: R Synonym: High Mobility Group At-Hook 1-Like 4,Ies2 Homolog, 1-Associated Protein 1,Papa-1,Zinc Finger Hit Domain-Contai Protein 4; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ino80b, Hmga1l4, Papa1, Znhit4 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Dna (150-Mer) Chain: X Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Dna (150-Mer) Chain: Y Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||||||||||||||||||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 4.80 Å | ||||||||||||||||||||||||||||||||||||||||
ligand | ADP, ZN | enzyme | Hydrolase E.C.3.6.4.12 BRENDA | ||||||||||||||||||||||||||||||||||||||||
Gene Ontology |
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Primary reference | Structure and regulation of the human INO80-nucleosome complex., Ayala R, Willhoft O, Aramayo RJ, Wilkinson M, McCormack EA, Ocloo L, Wigley DB, Zhang X, Nature. 2018 Apr;556(7701):391-395. doi: 10.1038/s41586-018-0021-6. Epub 2018 Apr, 11. PMID:29643506 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |