6NDC	Cell Adhesion Toxin	date	Dec 13, 2018
title	Rhodocetin In Complex With The Integrin Alpha2-A Domain With Bound
authors	J.Stetefeld, M.D.Mcdougall, P.C.Loewen
compound		source
Molecule: Snaclec Rhodocetin Subunit Gamma Chain: A, D, G, J, M, P		Organism_scientific: Calloselasma Rhodostoma Organism_common: Malayan Pit Viper Organism_taxid: 8717
Molecule: Snaclec Rhodocetin Subunit Delta Chain: B, E, H, K, N, Q		Organism_scientific: Calloselasma Rhodostoma Organism_common: Malayan Pit Viper Organism_taxid: 8717
Molecule: Integrin Alpha-2 Chain: C, F, I, L, O, R Synonym: Cd49 Antigen-Like Family Member B,Collagen Recepto Membrane Glycoprotein Ia,Gpia,Vla-2 Subunit Alpha; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Itga2, Cd49b Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 41	R_factor 0.215 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 131.140 131.140 251.460 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.35 Å
ligand	CL, CR, NA, NH4, SO4	enzyme
Gene Ontology	Chain Function Process Component A, J, N, P, K, E, B, H, Q, M, D, G toxin activity

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (442 Kb) [Save to disk] Biological Unit Coordinates (6ndc.pdb1.gz) 78 Kb Biological Unit Coordinates (6ndc.pdb2.gz) 78 Kb Biological Unit Coordinates (6ndc.pdb3.gz) 78 Kb Biological Unit Coordinates (6ndc.pdb4.gz) 78 Kb Biological Unit Coordinates (6ndc.pdb5.gz) 78 Kb Biological Unit Coordinates (6ndc.pdb6.gz) 78 Kb LPC: Ligand-Protein Contacts for 6NDC CSU: Contacts of Structural Units for 6NDC Structure Factors (2010 Kb) Retrieve 6NDC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6NDC from S2C, [Save to disk]

View 6NDC in 3D

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Visual 3D analysis of 6NDC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ndc_B] [6ndc_L] [6ndc_F] [6ndc_I] [6ndc_Q] [6ndc_O] [6ndc_R] [6ndc_J] [6ndc_G] [6ndc_M] [6ndc_H] [6ndc_C] [6ndc_A] [6ndc_D] [6ndc_K] [6ndc_P] [6ndc_E] [6ndc_N] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6NDC

Community annotation for 6NDC at PDBWiki (http://pdbwiki.org)

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