6UPJ	Hydrolase	date	Dec 10, 1996
title	Hiv-2 Proteaseu99294 Complex
authors	K.D.Watenpaugh, A.M.Mulichak, B.C.Finzel
compound		source
Molecule: Hiv-2 Protease Chain: A, B Synonym: Human Immunodeficiency Virus Type 2 Protease Ec: 3.4.23.16 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 2 Organism_taxid: 11709 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.161 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.889 45.675 134.574 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.34 Å
ligand	NIU	enzyme	Hydrolase E.C.3.4.23.16 BRENDA
related structures	by homologous chain: 2SAM, 5UPJ
Gene Ontology	Chain Function Process Component A, B
Primary reference	Use of medium-sized cycloalkyl rings to enhance secondary binding: discovery of a new class of human immunodeficiency virus (HIV) protease inhibitors., Romines KR, Watenpaugh KD, Tomich PK, Howe WJ, Morris JK, Lovasz KD, Mulichak AM, Finzel BC, Lynn JC, Horng MM, et al., J Med Chem 1995 May 26;38(11):1884-91. PMID:7783120

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk] Biological Unit Coordinates (6upj.pdb1.gz) 35 Kb LPC: Ligand-Protein Contacts for 6UPJ CSU: Contacts of Structural Units for 6UPJ Likely Quarternary Molecular Structure file(s) for 6UPJ Retrieve 6UPJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6UPJ from S2C, [Save to disk]

View 6UPJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6UPJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 6UPJ, from MSDmotif at EBI Genome occurence of 6UPJ's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d6upja_, region A [Jmol] [rasmolscript] [script source]     - Domain d6upjb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6upj] [6upj_A] [6upj_B] SWISS-PROT database: [P04584] Domain organization of [POL_HV2RO] by SWISSPFAM

Other resources with information on 6UPJ

Community annotation for 6UPJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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