6UR9 DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template, dideoxy primer, 3'-amino-ddGTP (nGTP), and Ca2+ date
authors Zhang, W., Lelyveld, V.S., Szostak, J.W.
compound source
R_Free 0.2431
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand CA, DOC, NG3, SO4 enzyme
A, D
  • DNA-directed DNA polymerase ...
  • 3'-5' exonuclease activity

  • Primary referenceSynthesis of phosphoramidate-linked DNA by a modified DNA polymerase., Lelyveld VS, Zhang W, Szostak JW, Proc Natl Acad Sci U S A. 2020 Mar 31;117(13):7276-7283. doi:, 10.1073/pnas.1922400117. Epub 2020 Mar 18. PMID:32188786
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (6ur9.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (6ur9.pdb2.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 6UR9
  • CSU: Contacts of Structural Units for 6UR9
  • Structure Factors (1925 Kb)
  • Retrieve 6UR9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UR9 from S2C, [Save to disk]
  • View 6UR9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6UR9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ur9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ur9_D] [6ur9_E] [6ur9_F] [6ur9_A] [6ur9_C] [6ur9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6UR9
  • Community annotation for 6UR9 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science