6VMI date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
0


1


2


3


4


5


6


7


8


9


A0


A1


A2


A3


A4


AB


AC


AD


AE


AF


AG


AH, AZ


AI


AJ


AK


AL


AM


AN


AO


AP


AQ


AR


AS


AT


AU


AV


AW


AX


AY


D


E


F


H


I


J


K


L


M


N


O


P, T


Q


R


S


TA, TC, TB


U


V


W


X


Y


Z


a


c
  • nuclease activity
  • endonuclease activity
  • ribonuclease III activity


    • d


    e


    f


    g


    h


    i


    k


    l


    m


    o


    p


    q


    r


    s


    v


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] () [Save to disk]
  • CSU: Contacts of Structural Units for 6VMI
  • Retrieve 6VMI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VMI from S2C, [Save to disk]
    • View 6VMI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VMI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vmi_N] [6vmi_AR] [6vmi_c] [6vmi_AX] [6vmi_A6] [6vmi_A1] [6vmi_v] [6vmi_AB] [6vmi_h] [6vmi_D] [6vmi_L] [6vmi_U] [6vmi_V] [6vmi_A0] [6vmi_K] [6vmi_TC] [6vmi_o] [6vmi_2] [6vmi_B] [6vmi_7] [6vmi_H] [6vmi_e] [6vmi_P] [6vmi_1] [6vmi_AW] [6vmi_j] [6vmi_W] [6vmi_AU] [6vmi_A4] [6vmi_k] [6vmi_9] [6vmi_T] [6vmi_AC] [6vmi_m] [6vmi_AS] [6vmi_5] [6vmi_q] [6vmi_AK] [6vmi_S] [6vmi_O] [6vmi_s] [6vmi_I] [6vmi_AN] [6vmi_Z] [6vmi_TA] [6vmi_u] [6vmi_AQ] [6vmi_8] [6vmi_AM] [6vmi_TB] [6vmi_A2] [6vmi_AT] [6vmi_AI] [6vmi_A] [6vmi_AZ] [6vmi_X] [6vmi_b] [6vmi_R] [6vmi_AY] [6vmi_A3] [6vmi_AL] [6vmi_i] [6vmi_l] [6vmi_M] [6vmi_AO] [6vmi_AF] [6vmi_a] [6vmi_6] [6vmi_AV] [6vmi_r] [6vmi_AH] [6vmi_Y] [6vmi_E] [6vmi_J] [6vmi_AA] [6vmi_f] [6vmi_4] [6vmi_AE] [6vmi_p] [6vmi_AD] [6vmi_d] [6vmi_F] [6vmi_A7] [6vmi_A5] [6vmi_AJ] [6vmi_AP] [6vmi_3] [6vmi_AG] [6vmi_0] [6vmi_g] [6vmi_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VMI
  • Community annotation for 6VMI at PDBWiki (http://pdbwiki.org)

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