6YD2 X-ray structure of furin in complex with the canavanine-based inhibitor 4-aminomethyl-phenylacetyl-canavanine-Tle-Arg-Amba date
authors Dahms, S.O.
compound source
symmetry
R_factor
R_Free 0.1771
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 00S, BVK, CA, CL, DMS, LYS, NA, ON8, PO4, TBG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] () [Save to disk]
  • LPC: Ligand-Protein Contacts for 6YD2
  • CSU: Contacts of Structural Units for 6YD2
  • Structure Factors (499 Kb)
  • Retrieve 6YD2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YD2 from S2C, [Save to disk]
  • View 6YD2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6YD2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e6yd2, region D:4002-4283 [Jmol] [rasmolscript] [script source]
        - Domain d1k6yd2, region D:56-211 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6yd2_611] [6yd2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YD2
  • Community annotation for 6YD2 at PDBWiki (http://pdbwiki.org)

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