6EU7 Signaling Protein date Oct 28, 2017
title Structure Of The Arsenite-Bound Form Of Aiox From Rhizobium Nt-26
authors S.Djordjevic, C.Badilla, A.Cole, J.Santini
compound source
Molecule: Putative Periplasmic Phosphite-Binding-Like Prote Ptxb-Like Protein Designated Aiox;
Chain: A, B, C, D, E, F
Engineered: Yes
Other_details: Residue Czs Is An Arsenite-Modified Cysteine
Organism_scientific: Rhizobium Sp. Nt-26
Organism_taxid: 1125847
Gene: Aiox, Nt26_p10026
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.192 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
202.359 116.917 136.838 90.00 90.02 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand CZ2 enzyme
Primary referenceA new family of periplasmic-binding proteins that sense arsenic oxyanions., Badilla C, Osborne TH, Cole A, Watson C, Djordjevic S, Santini JM, Sci Rep. 2018 Apr 19;8(1):6282. doi: 10.1038/s41598-018-24591-w. PMID:29674678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (6eu7.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (6eu7.pdb2.gz) 45 Kb
  • Biological Unit Coordinates (6eu7.pdb3.gz) 45 Kb
  • Biological Unit Coordinates (6eu7.pdb4.gz) 45 Kb
  • Biological Unit Coordinates (6eu7.pdb5.gz) 45 Kb
  • Biological Unit Coordinates (6eu7.pdb6.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 6EU7
  • CSU: Contacts of Structural Units for 6EU7
  • Structure Factors (2771 Kb)
  • Retrieve 6EU7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EU7 from S2C, [Save to disk]
  • View 6EU7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EU7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eu7_B] [6eu7_E] [6eu7_C] [6eu7_F] [6eu7_A] [6eu7_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EU7
  • Community annotation for 6EU7 at PDBWiki (http://pdbwiki.org)

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