6G9I Viral Protein date Apr 10, 2018
title Crystal Structure Of Ebolavirus Glycoprotein In Complex With Clomipramine
authors Y.Zhao, J.Ren, E.E.Fry, J.Xiao, A.R.Townsend, D.I.Stuart
compound source
Molecule: Envelope Glycoprotein,Envelope Glycoprotein
Chain: A
Synonym: Gp1,2,Gp,Gp1,2,Gp
Engineered: Yes
Mutation: Yes
Organism_scientific: Ebola Virus - Mayinga, Zaire, 1976
Organism_taxid: 128952
Gene: Gp
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293

Molecule: Envelope Glycoprotein,Envelope Glycoprotein
Chain: B
Synonym: Gp1,2,Gp
Engineered: Yes
Mutation: Yes

Organism_scientific: Ebola Virus - Mayinga, Zaire, 1976, Hu Immunodeficiency Virus 1;
Organism_taxid: 128952, 11676
Gene: Gp
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: H 3 2
R_factor 0.190 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.206 114.206 306.426 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.19 Å
ligand BMA, CXX, GOL, MAN, NAG enzyme
Primary referenceStructures of Ebola Virus Glycoprotein Complexes with Tricyclic Antidepressant and Antipsychotic Drugs., Zhao Y, Ren J, Fry EE, Xiao J, Townsend AR, Stuart DI, J Med Chem. 2018 May 21. doi: 10.1021/acs.jmedchem.8b00350. PMID:29741894
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (6g9i.pdb1.gz) 395 Kb
  • LPC: Ligand-Protein Contacts for 6G9I
  • CSU: Contacts of Structural Units for 6G9I
  • Structure Factors (619 Kb)
  • Retrieve 6G9I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6G9I from S2C, [Save to disk]
  • View 6G9I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6G9I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6g9i_B] [6g9i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6G9I
  • Community annotation for 6G9I at PDBWiki (http://pdbwiki.org)

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