6SZV Viral Protein date Oct 02, 2019
title Bat Influenza A Polymerase Elongation Complex With Incoming Analogue (Core + Endonuclease Only)
authors J.M.Wandzik, T.Kouba, S.Cusack
compound source
Molecule: Polymerase Acidic Protein
Chain: A
Engineered: Yes
Organism_scientific: Influenza A Virus (Alittle Yellow-Sho Batguatemala0602010(H17n10));
Organism_taxid: 1129347
Gene: Pa
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Rna-Directed Rna Polymerase Catalytic Subunit
Chain: B
Ec: 2.7.7.48
Engineered: Yes

Organism_scientific: Influenza A Virus (Alittle Yellow-Sho Batguatemala0602010(H17n10));
Organism_taxid: 1129347
Gene: Pb1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Polymerase Basic Protein 2
Chain: C
Engineered: Yes

Organism_scientific: Influenza A Virus (Alittle Yellow-Sho Batguatemala0602010(H17n10));
Organism_taxid: 1129347
Gene: Pb2
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: 5' Vrna
Chain: V
Engineered: Yes

Synthetic: Yes
Organism_scientific: Influenza B Virus
Organism_taxid: 11520

Molecule: 3' Vrna
Chain: R
Engineered: Yes

Synthetic: Yes
Organism_scientific: Influenza B Virus
Organism_taxid: 11520

Molecule: Capped Mrna
Chain: M
Engineered: Yes

Synthetic: Yes
Organism_scientific: Influenza B Virus
Organism_taxid: 11520
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.50 Å
ligand 2KH, M4H, MG enzyme Transferase E.C.2.7.7.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • RNA-directed 5'-3' RNA polym...


  • C


    Primary referenceA Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase., Wandzik JM, Kouba T, Karuppasamy M, Pflug A, Drncova P, Provaznik J, Azevedo N, Cusack S, Cell. 2020 Apr 16. pii: S0092-8674(20)30389-5. doi: 10.1016/j.cell.2020.03.061. PMID:32304664
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (278 Kb) [Save to disk]
  • Biological Unit Coordinates (6szv.pdb1.gz) 269 Kb
  • LPC: Ligand-Protein Contacts for 6SZV
  • CSU: Contacts of Structural Units for 6SZV
  • Retrieve 6SZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SZV from S2C, [Save to disk]
  • View 6SZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6SZV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6szv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6szv_C] [6szv_V] [6szv_M] [6szv_B] [6szv_A] [6szv_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6SZV
  • Community annotation for 6SZV at PDBWiki (http://pdbwiki.org)

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