7QNM Hydrolase date Dec 21, 2021
title Crystallization And Structural Analyses Of Zghad, A L-2-Halo Dehalogenase From The Marine Flavobacterium Zobellia Galact
authors E.Grigorian, T.Roret, C.Leblanc, L.Delage, M.Czjzek
compound source
Molecule: (S)-2-Haloacid Dehalogenase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z;
Ec: 3.8.1.2
Engineered: Yes
Mutation: Yes
 Organism_scientific: Zobellia Galactanivorans
Organism_taxid: 63186
Strain: Dsm 12802 Ccug 47099 Cip 106680 Ncimb 13871
Gene: Dhlb, Zobellia_4183
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 1 21 1
R_factor 0.206 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.165 132.789 275.698 90.00 92.31 90.00
method X-Ray Diffractionresolution 2.73 Å
ligand PO4 enzyme Hydrolase E.C.3.8.1.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (902 Kb) [Save to disk]
  • Biological Unit Coordinates (7qnm.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (7qnm.pdb2.gz) 78 Kb
  • Biological Unit Coordinates (7qnm.pdb3.gz) 77 Kb
  • Biological Unit Coordinates (7qnm.pdb4.gz) 78 Kb
  • Biological Unit Coordinates (7qnm.pdb5.gz) 77 Kb
  • Biological Unit Coordinates (7qnm.pdb6.gz) 78 Kb
  • Biological Unit Coordinates (7qnm.pdb7.gz) 77 Kb
  • Biological Unit Coordinates (7qnm.pdb8.gz) 78 Kb
  • Biological Unit Coordinates (7qnm.pdb9.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 7QNM
  • CSU: Contacts of Structural Units for 7QNM
  • Structure Factors (4187 Kb)
  • Retrieve 7QNM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7QNM from S2C, [Save to disk]
    • View 7QNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7QNM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7qnm_W] [7qnm_N] [7qnm_K] [7qnm_I] [7qnm_J] [7qnm_Q] [7qnm_X] [7qnm_C] [7qnm_M] [7qnm_S] [7qnm_G] [7qnm_Z] [7qnm_U] [7qnm_H] [7qnm_Y] [7qnm_T] [7qnm_A] [7qnm_D] [7qnm_F] [7qnm_V] [7qnm_R] [7qnm_L] [7qnm_P] [7qnm_B] [7qnm_E] [7qnm_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7QNM
  • Community annotation for 7QNM at PDBWiki (http://pdbwiki.org)

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