data_2Y29
#
_entry.id 2Y29
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.279
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
PDB 2Y29
PDBE EBI-46721
WWPDB D_1290046721
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.content_type
_pdbx_database_related.details
PDB 1UOA unspecified 'AFTER 3NS'
PDB 1TAW unspecified 'BOVINE TRYPSIN COMPLEXED TO APPI'
PDB 2Y3J unspecified 'STRUCTURE OF SEGMENT AIIGLM FROM THE AMYLOID-BETA PEPTIDE (AB, RESIDUES 30-35)'
PDB 1TKN unspecified
'SOLUTION STRUCTURE OF CAPPD*, AN INDEPENDENTLY FOLDEDEXTRACELLULAR DOMAIN OF HUMAN AMYLOID-BETA PRECURSORPROTEIN'
PDB 1QCM unspecified 'AMYLOID BETA PEPTIDE (25-35), NMR, 20 STRUCTURES'
PDB 1BA6 unspecified
;SOLUTION STRUCTURE OF THE METHIONINE-OXIDIZED AMYLOID BETA-PEPTIDE (1-40). DOES OXIDATION AFFECT CONFORMATIONAL SWITCHING? NMR, 10 STRUCTURES
;
PDB 1QYT unspecified 'SOLUTION STRUCTURE OF FRAGMENT (25-35) OF BETA AMYLOIDPEPTIDE IN SDS MICELLAR SOLUTION'
PDB 1BJB unspecified 'SOLUTION NMR STRUCTURE OF AMYLOID BETA[E16], RESIDUES 1-28, 14 STRUCTURES'
PDB 2Y3L unspecified 'STRUCTURE OF SEGMENT MVGGVVIA FROM THE AMYLOID-BETA PEPTIDE (AB, RESIDUES 35-42), ALTERNATE POLYMORPH 2'
PDB 2Y2A unspecified 'STRUCTURE OF SEGMENT KLVFFA FROM THE AMYLOID-BETA PEPTIDE (AB, RESIDUES 16-21), ALTERNATE POLYMORPH I'
PDB 2Y3K unspecified 'STRUCTURE OF SEGMENT MVGGVVIA FROM THE AMYLOID-BETA PEPTIDE (AB, RESIDUES 35-42), ALTERNATE POLYMORPH 1'
PDB 1CA0 unspecified 'BOVINE CHYMOTRYPSIN COMPLEXED TO APPI'
PDB 1UO8 unspecified 'AFTER 2NS'
PDB 1BRC unspecified .
PDB 1BA4 unspecified
;THE SOLUTION STRUCTURE OF AMYLOID BETA-PEPTIDE (1-40 ) IN A WATER-MICELLE ENVIRONMENT. IS THE MEMBRANE- SPANNING DOMAIN WHERE WE THINK IT IS? NMR, 10 STRUCTURES
;
PDB 1AAP unspecified .
PDB 2WK3 unspecified 'CRYSTAL STRUCTURE OF HUMAN INSULIN-DEGRADING ENZYME IN COMPLEX WITH AMYLOID-BETA (1-42)'
PDB 1QWP unspecified 'NMR ANALYSIS OF 25-35 FRAGMENT OF BETA AMYLOID PEPTIDE'
PDB 1X11 unspecified 'X11 PTB DOMAIN'
PDB 1ZE9 unspecified
;ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE COMPLEXED WITH A ZINC (II) CATION
;
PDB 1QXC unspecified 'NMR STRUCTURE OF THE FRAGMENT 25-35 OF BETA AMYLOID PEPTIDEIN 20/80 V:V HEXAFLUOROISOPROPANOL/WATER MIXTURE'
PDB 1IYT unspecified
;SOLUTION STRUCTURE OF THE ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE (1-42)
;
PDB 1ZE7 unspecified
;ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE IN WATER SOLUTION AT PH 6.5
;
PDB 2BEG unspecified
;3D STRUCTURE OF ALZHEIMER'S ABETA(1-42) FIBRILS
;
PDB 1UOI unspecified 'AFTER 4NS'
PDB 1AMB unspecified
;ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE (RESIDUES 1 - 28) (NMR, MINIMIZED AVERAGE STRUCTURE)
;
PDB 1RW6 unspecified 'HUMAN APP CORE DOMAIN'
PDB 1UO7 unspecified 'MOLECULAR DYNAMICS SIMULATION OF AMYLOID BETA 1-42 ( PDB: 1IYT) IN WATER'
PDB 1OWT unspecified
;STRUCTURE OF THE ALZHEIMER'S DISEASE AMYLOID PRECURSORPROTEIN COPPER BINDING DOMAIN
;
PDB 1AML unspecified
;THE ALZHEIMER'S DISEASE AMYLOID A4 PEPTIDE (RESIDUES 1 -40)
;
PDB 1AMC unspecified
;ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE (RESIDUES 1 - 28) (NMR, 5 STRUCTURES)
;
PDB 2BP4 unspecified
;ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE IN TFE-WATER (80-20) SOLUTION
;
PDB 1ZJD unspecified
;CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF COAGULATIONFACTOR XI IN COMPLEX WITH KUNITZ PROTEASE INHIBITOR DOMAINOF PROTEASE NEXIN II
;
PDB 2BOM unspecified
;MODEL OF ALZHEIMER'S DISEASE AMYLOID-SS PEPTIDE BASED ON A RNA BINDING PROTEIN
;
PDB 1BJC unspecified 'SOLUTION NMR STRUCTURE OF AMYLOID BETA[F16], RESIDUES 1-28, 15 STRUCTURES'
PDB 1MWP unspecified 'N-TERMINAL DOMAIN OF THE AMYLOID PRECURSOR PROTEIN'
PDB 1HZ3 unspecified
;ALZHEIMER'S DISEASE AMYLOID-BETA PEPTIDE (RESIDUES 10- 35)
;
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2Y29
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.SG_entry .
_pdbx_database_status.recvd_initial_deposition_date 2010-12-14
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Colletier, J.' 1
'Laganowsky, A.' 2
'Sawaya, M.R.' 3
'Eisenberg, D.' 4
#
_citation.id primary
_citation.title 'Molecular Basis for Amyloid-{Beta} Polymorphism.'
_citation.journal_abbrev Proc.Natl.Acad.Sci.USA
_citation.journal_volume 108
_citation.page_first 16938
_citation.page_last ?
_citation.year 2011
_citation.journal_id_ASTM PNASA6
_citation.country US
_citation.journal_id_ISSN 0027-8424
_citation.journal_id_CSD 0040
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 21949245
_citation.pdbx_database_id_DOI 10.1073/PNAS.1112600108
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Colletier, J.' 1
primary 'Laganowsky, A.' 2
primary 'Landau, M.' 3
primary 'Zhao, M.' 4
primary 'Soriaga, A.B.' 5
primary 'Goldschmidt, L.' 6
primary 'Flot, D.' 7
primary 'Cascio, D.' 8
primary 'Sawaya, M.R.' 9
primary 'Eisenberg, D.' 10
#
_cell.entry_id 2Y29
_cell.length_a 9.590
_cell.length_b 12.070
_cell.length_c 42.210
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 2Y29
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'AMYLOID BETA A4 PROTEIN' 724.909 1 ? ? 'SEGMENT KLVFFA, RESIDUES 687-692' ?
2 water nat water 18.015 2 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
;AMYLOID BETA PEPTIDE, ABPP, APPI, APP, ALZHEIMER DISEASE AMYLOID PROTEIN, CEREBRAL VASCULAR AMYLOID PEPTIDE, CVAP, PREA4, PROTEASE NEXIN-II, PN-II
;
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code KLVFFA
_entity_poly.pdbx_seq_one_letter_code_can KLVFFA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 LYS n
1 2 LEU n
1 3 VAL n
1 4 PHE n
1 5 PHE n
1 6 ALA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS'
_pdbx_entity_src_syn.organism_common_name HUMAN
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code A4_HUMAN
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_db_accession P05067
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2Y29
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P05067
_struct_ref_seq.db_align_beg 687
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 692
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 2
_struct_ref_seq.pdbx_auth_seq_align_end 7
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
HOH non-polymer . WATER ? 'H2 O' 18.015
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.entry_id 2Y29
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 3
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.73
_exptl_crystal.density_percent_sol 29
_exptl_crystal.description NONE
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 8.5
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details
;AB16-21 FORM III CRYSTALS WERE OBTAINED AFTER THE SEGMENT WAS DISSOLVED IN WATER AT 5 MG/ML AND MIXED WITH 0.2M AMMONIUM ACETATE, 0.1 M TRIS BUFFER PH 8.5 AND 30% ISOPROPANOL.
;
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MARMOSAIC 225 mm CCD'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.87260
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID23-2'
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID23-2
_diffrn_source.pdbx_wavelength 0.87260
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 2Y29
_reflns.observed_criterion_sigma_I 3.0
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 20.00
_reflns.d_resolution_high 2.30
_reflns.number_obs 266
_reflns.number_all ?
_reflns.percent_possible_obs 94.3
_reflns.pdbx_Rmerge_I_obs 0.19
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 5.90
_reflns.B_iso_Wilson_estimate 34.134
_reflns.pdbx_redundancy 3.9
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 2.30
_reflns_shell.d_res_low 2.40
_reflns_shell.percent_possible_all 89.5
_reflns_shell.Rmerge_I_obs 0.52
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 3.19
_reflns_shell.pdbx_redundancy 3.1
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 2Y29
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 251
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 20.00
_refine.ls_d_res_high 2.30
_refine.ls_percent_reflns_obs 94.31
_refine.ls_R_factor_obs 0.22609
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.22410
_refine.ls_R_factor_R_free 0.26003
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5.3
_refine.ls_number_reflns_R_free 14
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.930
_refine.correlation_coeff_Fo_to_Fc_free 0.958
_refine.B_iso_mean 22.654
_refine.aniso_B[1][1] -11.45
_refine.aniso_B[2][2] 11.80
_refine.aniso_B[3][3] -0.34
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.141
_refine.pdbx_overall_ESU_R_Free 0.061
_refine.overall_SU_ML 0.080
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 3.543
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 52
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 2
_refine_hist.number_atoms_total 54
_refine_hist.d_res_high 2.30
_refine_hist.d_res_low 20.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.023 0.023 ? 53 'X-RAY DIFFRACTION' ?
r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.519 1.987 ? 70 'X-RAY DIFFRACTION' ?
r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 5.136 5.000 ? 5 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 14.728 20.000 ? 2 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 19.219 15.000 ? 9 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.127 0.200 ? 8 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.009 0.020 ? 38 'X-RAY DIFFRACTION' ?
r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.301
_refine_ls_shell.d_res_low 2.360
_refine_ls_shell.number_reflns_R_work 26
_refine_ls_shell.R_factor_R_work 0.276
_refine_ls_shell.percent_reflns_obs 100.00
_refine_ls_shell.R_factor_R_free 0.683
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 1
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_struct.entry_id 2Y29
_struct.title
'Structure of segment KLVFFA from the amyloid-beta peptide (Ab, residues 16-21), alternate polymorph III'
_struct.pdbx_descriptor 'AMYLOID BETA A4 PROTEIN'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2Y29
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
_struct_keywords.text 'PROTEIN FIBRIL, ALZHEIMER DISEASE'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_biol.id 1
#
_database_PDB_matrix.entry_id 2Y29
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 2Y29
_atom_sites.fract_transf_matrix[1][1] 0.104275
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.082850
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.023691
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . LYS A 1 1 ? -3.367 5.703 7.940 1.00 24.11 ? 2 LYS A N 1
ATOM 2 C CA . LYS A 1 1 ? -3.973 6.815 7.193 1.00 25.75 ? 2 LYS A CA 1
ATOM 3 C C . LYS A 1 1 ? -4.182 6.420 5.718 1.00 22.45 ? 2 LYS A C 1
ATOM 4 O O . LYS A 1 1 ? -5.254 5.972 5.404 1.00 22.63 ? 2 LYS A O 1
ATOM 5 C CB . LYS A 1 1 ? -3.204 8.133 7.368 1.00 36.28 ? 2 LYS A CB 1
ATOM 6 C CG . LYS A 1 1 ? -3.553 8.966 8.663 1.00 37.36 ? 2 LYS A CG 1
ATOM 7 C CD . LYS A 1 1 ? -4.568 10.129 8.386 1.00 43.82 ? 2 LYS A CD 1
ATOM 8 C CE . LYS A 1 1 ? -4.592 11.222 9.509 1.00 38.18 ? 2 LYS A CE 1
ATOM 9 N NZ . LYS A 1 1 ? -5.860 12.074 9.514 1.00 37.31 ? 2 LYS A NZ 1
ATOM 10 N N . LEU A 1 2 ? -3.178 6.516 4.843 1.00 20.46 ? 3 LEU A N 1
ATOM 11 C CA . LEU A 1 2 ? -3.378 6.265 3.417 1.00 16.76 ? 3 LEU A CA 1
ATOM 12 C C . LEU A 1 2 ? -2.869 4.947 2.927 1.00 15.82 ? 3 LEU A C 1
ATOM 13 O O . LEU A 1 2 ? -1.662 4.690 3.015 1.00 14.04 ? 3 LEU A O 1
ATOM 14 C CB . LEU A 1 2 ? -2.742 7.362 2.566 1.00 18.25 ? 3 LEU A CB 1
ATOM 15 C CG . LEU A 1 2 ? -2.870 7.162 1.045 1.00 20.82 ? 3 LEU A CG 1
ATOM 16 C CD1 . LEU A 1 2 ? -4.316 7.370 0.513 1.00 18.21 ? 3 LEU A CD1 1
ATOM 17 C CD2 . LEU A 1 2 ? -1.880 8.040 0.272 1.00 23.81 ? 3 LEU A CD2 1
ATOM 18 N N . VAL A 1 3 ? -3.775 4.132 2.356 1.00 14.07 ? 4 VAL A N 1
ATOM 19 C CA . VAL A 1 3 ? -3.374 2.906 1.669 1.00 14.54 ? 4 VAL A CA 1
ATOM 20 C C . VAL A 1 3 ? -3.942 2.715 0.301 1.00 16.12 ? 4 VAL A C 1
ATOM 21 O O . VAL A 1 3 ? -5.144 2.489 0.125 1.00 18.28 ? 4 VAL A O 1
ATOM 22 C CB . VAL A 1 3 ? -3.682 1.660 2.471 1.00 14.30 ? 4 VAL A CB 1
ATOM 23 C CG1 . VAL A 1 3 ? -3.181 0.420 1.697 1.00 14.29 ? 4 VAL A CG1 1
ATOM 24 C CG2 . VAL A 1 3 ? -3.007 1.755 3.808 1.00 13.11 ? 4 VAL A CG2 1
ATOM 25 N N . PHE A 1 4 ? -3.053 2.791 -0.676 1.00 19.17 ? 5 PHE A N 1
ATOM 26 C CA . PHE A 1 4 ? -3.405 2.635 -2.083 1.00 18.86 ? 5 PHE A CA 1
ATOM 27 C C . PHE A 1 4 ? -2.753 1.390 -2.696 1.00 18.52 ? 5 PHE A C 1
ATOM 28 O O . PHE A 1 4 ? -1.542 1.185 -2.546 1.00 19.22 ? 5 PHE A O 1
ATOM 29 C CB . PHE A 1 4 ? -2.989 3.886 -2.863 1.00 19.73 ? 5 PHE A CB 1
ATOM 30 C CG . PHE A 1 4 ? -3.228 3.777 -4.344 1.00 19.23 ? 5 PHE A CG 1
ATOM 31 C CD1 . PHE A 1 4 ? -2.407 2.992 -5.140 1.00 19.50 ? 5 PHE A CD1 1
ATOM 32 C CD2 . PHE A 1 4 ? -4.274 4.472 -4.940 1.00 19.79 ? 5 PHE A CD2 1
ATOM 33 C CE1 . PHE A 1 4 ? -2.646 2.881 -6.512 1.00 20.32 ? 5 PHE A CE1 1
ATOM 34 C CE2 . PHE A 1 4 ? -4.511 4.367 -6.279 1.00 19.74 ? 5 PHE A CE2 1
ATOM 35 C CZ . PHE A 1 4 ? -3.696 3.559 -7.072 1.00 19.06 ? 5 PHE A CZ 1
ATOM 36 N N . PHE A 1 5 ? -3.559 0.594 -3.396 1.00 18.19 ? 6 PHE A N 1
ATOM 37 C CA . PHE A 1 5 ? -3.115 -0.607 -4.121 1.00 21.35 ? 6 PHE A CA 1
ATOM 38 C C . PHE A 1 5 ? -3.888 -0.800 -5.415 1.00 24.27 ? 6 PHE A C 1
ATOM 39 O O . PHE A 1 5 ? -5.062 -1.252 -5.404 1.00 21.75 ? 6 PHE A O 1
ATOM 40 C CB . PHE A 1 5 ? -3.208 -1.925 -3.274 1.00 21.59 ? 6 PHE A CB 1
ATOM 41 C CG . PHE A 1 5 ? -2.330 -3.029 -3.805 1.00 23.29 ? 6 PHE A CG 1
ATOM 42 C CD1 . PHE A 1 5 ? -0.920 -2.975 -3.642 1.00 24.72 ? 6 PHE A CD1 1
ATOM 43 C CD2 . PHE A 1 5 ? -2.870 -4.096 -4.537 1.00 22.64 ? 6 PHE A CD2 1
ATOM 44 C CE1 . PHE A 1 5 ? -0.091 -3.994 -4.191 1.00 24.66 ? 6 PHE A CE1 1
ATOM 45 C CE2 . PHE A 1 5 ? -2.037 -5.101 -5.091 1.00 19.71 ? 6 PHE A CE2 1
ATOM 46 C CZ . PHE A 1 5 ? -0.672 -5.068 -4.920 1.00 19.51 ? 6 PHE A CZ 1
ATOM 47 N N . ALA A 1 6 ? -3.223 -0.505 -6.532 1.00 24.61 ? 7 ALA A N 1
ATOM 48 C CA . ALA A 1 6 ? -3.827 -0.715 -7.821 1.00 26.63 ? 7 ALA A CA 1
ATOM 49 C C . ALA A 1 6 ? -3.187 -1.922 -8.487 1.00 31.16 ? 7 ALA A C 1
ATOM 50 O O . ALA A 1 6 ? -1.980 -1.962 -8.645 1.00 29.56 ? 7 ALA A O 1
ATOM 51 C CB . ALA A 1 6 ? -3.694 0.510 -8.669 1.00 29.69 ? 7 ALA A CB 1
ATOM 52 O OXT . ALA A 1 6 ? -3.840 -2.909 -8.854 1.00 38.24 ? 7 ALA A OXT 1
HETATM 53 O O . HOH B 2 . ? -5.967 -2.380 -10.310 1.00 17.97 ? 2001 HOH A O 1
HETATM 54 O O . HOH B 2 . ? -6.843 -4.832 -7.024 1.00 29.82 ? 2002 HOH A O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 LYS 1 2 2 LYS LYS A . n
A 1 2 LEU 2 3 3 LEU LEU A . n
A 1 3 VAL 3 4 4 VAL VAL A . n
A 1 4 PHE 4 5 5 PHE PHE A . n
A 1 5 PHE 5 6 6 PHE PHE A . n
A 1 6 ALA 6 7 7 ALA ALA A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 2001 2001 HOH HOH A .
B 2 HOH 2 2002 2002 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_pdbx_audit_revision_history.ordinal 1
_pdbx_audit_revision_history.data_content_type 'Structure model'
_pdbx_audit_revision_history.major_revision 1
_pdbx_audit_revision_history.minor_revision 0
_pdbx_audit_revision_history.revision_date 2011-10-26
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.6.0081 ? 1
XDS 'data reduction' . ? 2
XSCALE 'data scaling' . ? 3
PHASER phasing . ? 4
#
_pdbx_entry_details.entry_id 2Y29
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details
;IN VIVO AMYLOID BETA PEPTIDE (AB) IS A PROTEOLYTIC PRODUCT OF
THE AMYLOID PRECURSOR PROTEIN (APP). AB SEGMENT 16-KLVFFA-21
CORRESPONDS TO RESIDUES 687-692 OF APP
;
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#