data_2Y3L
#
_entry.id 2Y3L
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.279
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
PDB 2Y3L
PDBE EBI-46809
WWPDB D_1290046809
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.content_type
_pdbx_database_related.details
PDB 1UOA unspecified 'AFTER 3NS'
PDB 1TAW unspecified 'BOVINE TRYPSIN COMPLEXED TO APPI'
PDB 2Y3J unspecified 'STRUCTURE OF SEGMENT AIIGLM FROM THE AMYLOID-BETA PEPTIDE (AB, RESIDUES 30-35)'
PDB 1TKN unspecified
'SOLUTION STRUCTURE OF CAPPD*, AN INDEPENDENTLY FOLDEDEXTRACELLULAR DOMAIN OF HUMAN AMYLOID-BETA PRECURSORPROTEIN'
PDB 1QCM unspecified 'AMYLOID BETA PEPTIDE (25-35), NMR, 20 STRUCTURES'
PDB 1BA6 unspecified
;SOLUTION STRUCTURE OF THE METHIONINE-OXIDIZED AMYLOID BETA-PEPTIDE (1-40). DOES OXIDATION AFFECT CONFORMATIONAL SWITCHING? NMR, 10 STRUCTURES
;
PDB 1QYT unspecified 'SOLUTION STRUCTURE OF FRAGMENT (25-35) OF BETA AMYLOIDPEPTIDE IN SDS MICELLAR SOLUTION'
PDB 1BJB unspecified 'SOLUTION NMR STRUCTURE OF AMYLOID BETA[E16], RESIDUES 1-28, 14 STRUCTURES'
PDB 2Y2A unspecified 'STRUCTURE OF SEGMENT KLVFFA FROM THE AMYLOID-BETA PEPTIDE (AB, RESIDUES 16-21), ALTERNATE POLYMORPH I'
PDB 2Y3K unspecified 'STRUCTURE OF SEGMENT MVGGVVIA FROM THE AMYLOID-BETA PEPTIDE (AB, RESIDUES 35-42), ALTERNATE POLYMORPH 1'
PDB 1CA0 unspecified 'BOVINE CHYMOTRYPSIN COMPLEXED TO APPI'
PDB 1UO8 unspecified 'AFTER 2NS'
PDB 1BRC unspecified .
PDB 1BA4 unspecified
;THE SOLUTION STRUCTURE OF AMYLOID BETA-PEPTIDE (1-40 ) IN A WATER-MICELLE ENVIRONMENT. IS THE MEMBRANE- SPANNING DOMAIN WHERE WE THINK IT IS? NMR, 10 STRUCTURES
;
PDB 1AAP unspecified .
PDB 2WK3 unspecified 'CRYSTAL STRUCTURE OF HUMAN INSULIN-DEGRADING ENZYME IN COMPLEX WITH AMYLOID-BETA (1-42)'
PDB 1QWP unspecified 'NMR ANALYSIS OF 25-35 FRAGMENT OF BETA AMYLOID PEPTIDE'
PDB 1X11 unspecified 'X11 PTB DOMAIN'
PDB 1ZE9 unspecified
;ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE COMPLEXED WITH A ZINC (II) CATION
;
PDB 1QXC unspecified 'NMR STRUCTURE OF THE FRAGMENT 25-35 OF BETA AMYLOID PEPTIDEIN 20/80 V:V HEXAFLUOROISOPROPANOL/WATER MIXTURE'
PDB 1IYT unspecified
;SOLUTION STRUCTURE OF THE ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE (1-42)
;
PDB 1ZE7 unspecified
;ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE IN WATER SOLUTION AT PH 6.5
;
PDB 2BEG unspecified
;3D STRUCTURE OF ALZHEIMER'S ABETA(1-42) FIBRILS
;
PDB 1UOI unspecified 'AFTER 4NS'
PDB 1AMB unspecified
;ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE (RESIDUES 1 - 28) (NMR, MINIMIZED AVERAGE STRUCTURE)
;
PDB 1RW6 unspecified 'HUMAN APP CORE DOMAIN'
PDB 1UO7 unspecified 'MOLECULAR DYNAMICS SIMULATION OF AMYLOID BETA 1-42 ( PDB: 1IYT) IN WATER'
PDB 1OWT unspecified
;STRUCTURE OF THE ALZHEIMER'S DISEASE AMYLOID PRECURSORPROTEIN COPPER BINDING DOMAIN
;
PDB 1AML unspecified
;THE ALZHEIMER'S DISEASE AMYLOID A4 PEPTIDE (RESIDUES 1 -40)
;
PDB 1AMC unspecified
;ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE (RESIDUES 1 - 28) (NMR, 5 STRUCTURES)
;
PDB 2BP4 unspecified
;ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE IN TFE-WATER (80-20) SOLUTION
;
PDB 1ZJD unspecified
;CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF COAGULATIONFACTOR XI IN COMPLEX WITH KUNITZ PROTEASE INHIBITOR DOMAINOF PROTEASE NEXIN II
;
PDB 2BOM unspecified
;MODEL OF ALZHEIMER'S DISEASE AMYLOID-SS PEPTIDE BASED ON A RNA BINDING PROTEIN
;
PDB 1BJC unspecified 'SOLUTION NMR STRUCTURE OF AMYLOID BETA[F16], RESIDUES 1-28, 15 STRUCTURES'
PDB 1MWP unspecified 'N-TERMINAL DOMAIN OF THE AMYLOID PRECURSOR PROTEIN'
PDB 2Y29 unspecified 'STRUCTURE OF SEGMENT KLVFFA FROM THE AMYLOID-BETA PEPTIDE (AB, RESIDUES 16-21), ALTERNATE POLYMORPH III'
PDB 1HZ3 unspecified
;ALZHEIMER'S DISEASE AMYLOID-BETA PEPTIDE (RESIDUES 10- 35)
;
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2Y3L
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.SG_entry .
_pdbx_database_status.recvd_initial_deposition_date 2010-12-21
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Colletier, J.P.' 1
'Laganowsky, A.' 2
'Sawaya, M.R.' 3
'Eisenberg, D.' 4
#
_citation.id primary
_citation.title 'Molecular Basis for Amyloid-{Beta} Polymorphism.'
_citation.journal_abbrev Proc.Natl.Acad.Sci.USA
_citation.journal_volume 108
_citation.page_first 16938
_citation.page_last ?
_citation.year 2011
_citation.journal_id_ASTM PNASA6
_citation.country US
_citation.journal_id_ISSN 0027-8424
_citation.journal_id_CSD 0040
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 21949245
_citation.pdbx_database_id_DOI 10.1073/PNAS.1112600108
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Colletier, J.' 1
primary 'Laganowsky, A.' 2
primary 'Landau, M.' 3
primary 'Zhao, M.' 4
primary 'Soriaga, A.B.' 5
primary 'Goldschmidt, L.' 6
primary 'Flot, D.' 7
primary 'Cascio, D.' 8
primary 'Sawaya, M.R.' 9
primary 'Eisenberg, D.' 10
#
_cell.entry_id 2Y3L
_cell.length_a 9.470
_cell.length_b 47.590
_cell.length_c 20.800
_cell.angle_alpha 90.00
_cell.angle_beta 103.57
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 2Y3L
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 4
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description 'AMYLOID BETA A4 PROTEIN'
_entity.formula_weight 744.943
_entity.pdbx_number_of_molecules 4
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment 'RESIDUES 706-713'
_entity.details ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
;AMYLOID BETA PEPTIDE, ABPP, APPI, APP, ALZHEIMER DISEASE AMYLOID PROTEIN, CEREBRAL VASCULAR AMYLOID PEPTIDE, CVAP, PREA4, PROTEASE NEXIN-II, PN-II
;
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code MVGGVVIA
_entity_poly.pdbx_seq_one_letter_code_can MVGGVVIA
_entity_poly.pdbx_strand_id A,B,C,G
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET n
1 2 VAL n
1 3 GLY n
1 4 GLY n
1 5 VAL n
1 6 VAL n
1 7 ILE n
1 8 ALA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS'
_pdbx_entity_src_syn.organism_common_name HUMAN
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code A4_HUMAN
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_db_accession P05067
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 2Y3L A 1 ? 8 ? P05067 706 ? 713 ? 1 8
2 1 2Y3L B 1 ? 8 ? P05067 706 ? 713 ? 1 8
3 1 2Y3L C 1 ? 8 ? P05067 706 ? 713 ? 1 8
4 1 2Y3L G 1 ? 8 ? P05067 706 ? 713 ? 1 8
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.entry_id 2Y3L
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.38
_exptl_crystal.density_percent_sol 10.91
_exptl_crystal.description NONE
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.5
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details
;AB3542 CRYSTALS (FIRST DISSOLVED IN WATER) WERE FOUND IN 1.5-YEAR-OLD TRAYS SET AT 0.5 MG/ML IN 0.1 M HEPES PH 7.5, 0.5 M MG FORMATE (CRYSTAL FORM II)
;
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.97918
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
_diffrn_source.pdbx_wavelength 0.97918
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 2Y3L
_reflns.observed_criterion_sigma_I 1.5
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 23.80
_reflns.d_resolution_high 2.10
_reflns.number_obs 896
_reflns.number_all ?
_reflns.percent_possible_obs 88.9
_reflns.pdbx_Rmerge_I_obs 0.14
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 2.54
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 1.90
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 2.10
_reflns_shell.d_res_low 2.21
_reflns_shell.percent_possible_all 88.3
_reflns_shell.Rmerge_I_obs 0.43
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 1.55
_reflns_shell.pdbx_redundancy 1.91
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 2Y3L
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 896
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 23.80
_refine.ls_d_res_high 2.10
_refine.ls_percent_reflns_obs 88.94
_refine.ls_R_factor_obs 0.20435
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.20165
_refine.ls_R_factor_R_free 0.24699
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5.6
_refine.ls_number_reflns_R_free 53
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.972
_refine.correlation_coeff_Fo_to_Fc_free 0.950
_refine.B_iso_mean 11.899
_refine.aniso_B[1][1] 0.26
_refine.aniso_B[2][2] -0.58
_refine.aniso_B[3][3] 0.27
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.10
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'U VALUES REFINED INDIVIDUALLY.'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.717
_refine.pdbx_overall_ESU_R_Free 0.262
_refine.overall_SU_ML 0.151
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 5.990
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 204
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 204
_refine_hist.d_res_high 2.10
_refine_hist.d_res_low 23.80
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.024 0.023 ? 200 'X-RAY DIFFRACTION' ?
r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 2.896 2.030 ? 268 'X-RAY DIFFRACTION' ?
r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 11.591 5.000 ? 28 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 16.039 15.000 ? 32 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.174 0.200 ? 40 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.005 0.020 ? 128 'X-RAY DIFFRACTION' ?
r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.101
_refine_ls_shell.d_res_low 2.155
_refine_ls_shell.number_reflns_R_work 65
_refine_ls_shell.R_factor_R_work 0.222
_refine_ls_shell.percent_reflns_obs 88.31
_refine_ls_shell.R_factor_R_free 0.222
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 3
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_struct.entry_id 2Y3L
_struct.title
'Structure of segment MVGGVVIA from the amyloid-beta peptide (Ab, residues 35-42), alternate polymorph 2'
_struct.pdbx_descriptor 'AMYLOID BETA A4 PROTEIN'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2Y3L
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
_struct_keywords.text 'PROTEIN FIBRIL, ALZHEIMER DISEASE'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 1 ?
D N N 1 ?
#
_struct_biol.id 1
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 ILE 7 C . ? ILE 7 C ALA 8 C ? ALA 8 C 1 -5.23
2 ILE 7 D . ? ILE 7 G ALA 8 D ? ALA 8 G 1 -28.75
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA ? 2 ?
BA ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA 1 2 ? anti-parallel
BA 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA 1 GLY A 3 ? ILE A 7 ? GLY A 3 ILE A 7
AA 2 VAL C 2 ? VAL C 6 ? VAL C 2 VAL C 6
BA 1 VAL B 2 ? ILE B 7 ? VAL B 2 ILE B 7
BA 2 VAL D 2 ? ILE D 7 ? VAL G 2 ILE G 7
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA 1 2 N ILE A 7 ? N ILE A 7 O VAL C 2 ? O VAL C 2
BA 1 2 N ILE B 7 ? N ILE B 7 O VAL D 2 ? O VAL G 2
#
_database_PDB_matrix.entry_id 2Y3L
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 2Y3L
_atom_sites.fract_transf_matrix[1][1] 0.105597
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.025488
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.021013
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.049458
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . MET A 1 1 ? -0.163 13.830 7.209 1.00 18.36 ? 1 MET A N 1
ATOM 2 C CA . MET A 1 1 ? 0.339 13.074 8.409 1.00 17.78 ? 1 MET A CA 1
ATOM 3 C C . MET A 1 1 ? -0.471 11.851 8.533 1.00 16.42 ? 1 MET A C 1
ATOM 4 O O . MET A 1 1 ? -1.650 11.851 8.230 1.00 15.74 ? 1 MET A O 1
ATOM 5 C CB . MET A 1 1 ? 0.203 13.850 9.716 1.00 19.56 ? 1 MET A CB 1
ATOM 6 C CG . MET A 1 1 ? 0.660 13.024 10.937 1.00 20.45 ? 1 MET A CG 1
ATOM 7 S SD . MET A 1 1 ? -0.289 13.471 12.415 1.00 23.22 ? 1 MET A SD 1
ATOM 8 C CE . MET A 1 1 ? -0.270 15.283 12.311 1.00 22.05 ? 1 MET A CE 1
ATOM 9 N N . VAL A 1 2 ? 0.185 10.811 9.007 1.00 15.39 ? 2 VAL A N 1
ATOM 10 C CA . VAL A 1 2 ? -0.347 9.492 8.995 1.00 14.55 ? 2 VAL A CA 1
ATOM 11 C C . VAL A 1 2 ? 0.351 8.951 10.220 1.00 13.97 ? 2 VAL A C 1
ATOM 12 O O . VAL A 1 2 ? 1.584 8.970 10.283 1.00 13.53 ? 2 VAL A O 1
ATOM 13 C CB . VAL A 1 2 ? 0.127 8.688 7.723 1.00 14.76 ? 2 VAL A CB 1
ATOM 14 C CG1 . VAL A 1 2 ? -0.486 7.231 7.664 1.00 15.42 ? 2 VAL A CG1 1
ATOM 15 C CG2 . VAL A 1 2 ? -0.132 9.411 6.432 1.00 14.40 ? 2 VAL A CG2 1
ATOM 16 N N . GLY A 1 3 ? -0.424 8.472 11.193 1.00 13.07 ? 3 GLY A N 1
ATOM 17 C CA . GLY A 1 3 ? 0.159 7.909 12.423 1.00 12.28 ? 3 GLY A CA 1
ATOM 18 C C . GLY A 1 3 ? -0.498 6.622 12.891 1.00 11.72 ? 3 GLY A C 1
ATOM 19 O O . GLY A 1 3 ? -1.667 6.386 12.644 1.00 11.65 ? 3 GLY A O 1
ATOM 20 N N . GLY A 1 4 ? 0.237 5.778 13.585 1.00 11.14 ? 4 GLY A N 1
ATOM 21 C CA . GLY A 1 4 ? -0.390 4.559 14.079 1.00 10.37 ? 4 GLY A CA 1
ATOM 22 C C . GLY A 1 4 ? 0.318 4.000 15.285 1.00 9.97 ? 4 GLY A C 1
ATOM 23 O O . GLY A 1 4 ? 1.544 4.073 15.415 1.00 9.61 ? 4 GLY A O 1
ATOM 24 N N . VAL A 1 5 ? -0.461 3.404 16.165 1.00 9.59 ? 5 VAL A N 1
ATOM 25 C CA . VAL A 1 5 ? 0.100 2.901 17.403 1.00 9.30 ? 5 VAL A CA 1
ATOM 26 C C . VAL A 1 5 ? -0.538 1.584 17.732 1.00 8.97 ? 5 VAL A C 1
ATOM 27 O O . VAL A 1 5 ? -1.712 1.456 17.531 1.00 9.03 ? 5 VAL A O 1
ATOM 28 C CB . VAL A 1 5 ? -0.250 3.864 18.515 1.00 9.28 ? 5 VAL A CB 1
ATOM 29 C CG1 . VAL A 1 5 ? 0.362 5.208 18.224 1.00 9.37 ? 5 VAL A CG1 1
ATOM 30 C CG2 . VAL A 1 5 ? -1.783 4.047 18.580 1.00 9.24 ? 5 VAL A CG2 1
ATOM 31 N N . VAL A 1 6 ? 0.219 0.632 18.255 1.00 9.09 ? 6 VAL A N 1
ATOM 32 C CA . VAL A 1 6 ? -0.330 -0.609 18.819 1.00 9.58 ? 6 VAL A CA 1
ATOM 33 C C . VAL A 1 6 ? 0.221 -0.830 20.202 1.00 10.06 ? 6 VAL A C 1
ATOM 34 O O . VAL A 1 6 ? 1.384 -0.499 20.498 1.00 9.98 ? 6 VAL A O 1
ATOM 35 C CB . VAL A 1 6 ? 0.072 -1.874 17.989 1.00 9.46 ? 6 VAL A CB 1
ATOM 36 C CG1 . VAL A 1 6 ? 1.476 -2.195 18.274 1.00 9.63 ? 6 VAL A CG1 1
ATOM 37 C CG2 . VAL A 1 6 ? -0.713 -3.098 18.367 1.00 9.30 ? 6 VAL A CG2 1
ATOM 38 N N . ILE A 1 7 ? -0.617 -1.424 21.054 1.00 10.76 ? 7 ILE A N 1
ATOM 39 C CA . ILE A 1 7 ? -0.204 -1.967 22.376 1.00 10.96 ? 7 ILE A CA 1
ATOM 40 C C . ILE A 1 7 ? -0.715 -3.390 22.461 1.00 11.23 ? 7 ILE A C 1
ATOM 41 O O . ILE A 1 7 ? -1.859 -3.661 22.131 1.00 11.30 ? 7 ILE A O 1
ATOM 42 C CB . ILE A 1 7 ? -0.821 -1.206 23.559 1.00 10.91 ? 7 ILE A CB 1
ATOM 43 C CG1 . ILE A 1 7 ? -0.501 0.281 23.505 1.00 10.86 ? 7 ILE A CG1 1
ATOM 44 C CG2 . ILE A 1 7 ? -0.312 -1.805 24.893 1.00 11.15 ? 7 ILE A CG2 1
ATOM 45 C CD1 . ILE A 1 7 ? -0.941 1.021 24.723 1.00 10.56 ? 7 ILE A CD1 1
ATOM 46 N N . ALA A 1 8 ? 0.094 -4.308 22.900 1.00 11.71 ? 8 ALA A N 1
ATOM 47 C CA . ALA A 1 8 ? -0.374 -5.657 22.858 1.00 12.44 ? 8 ALA A CA 1
ATOM 48 C C . ALA A 1 8 ? 0.524 -6.600 23.568 1.00 13.14 ? 8 ALA A C 1
ATOM 49 O O . ALA A 1 8 ? 0.120 -7.764 23.508 1.00 14.05 ? 8 ALA A O 1
ATOM 50 C CB . ALA A 1 8 ? -0.518 -6.109 21.418 1.00 12.58 ? 8 ALA A CB 1
ATOM 51 O OXT . ALA A 1 8 ? 1.603 -6.276 24.115 1.00 13.35 ? 8 ALA A OXT 1
ATOM 52 N N . MET B 1 1 ? 2.111 14.117 -2.655 1.00 17.47 ? 1 MET B N 1
ATOM 53 C CA . MET B 1 1 ? 2.557 13.242 -1.505 1.00 16.99 ? 1 MET B CA 1
ATOM 54 C C . MET B 1 1 ? 1.898 11.874 -1.618 1.00 15.61 ? 1 MET B C 1
ATOM 55 O O . MET B 1 1 ? 0.686 11.774 -1.830 1.00 14.96 ? 1 MET B O 1
ATOM 56 C CB . MET B 1 1 ? 2.222 13.924 -0.146 1.00 18.91 ? 1 MET B CB 1
ATOM 57 C CG . MET B 1 1 ? 2.515 13.099 1.144 1.00 19.56 ? 1 MET B CG 1
ATOM 58 S SD . MET B 1 1 ? 1.888 14.059 2.610 1.00 22.77 ? 1 MET B SD 1
ATOM 59 C CE . MET B 1 1 ? 2.309 15.752 2.112 1.00 21.39 ? 1 MET B CE 1
ATOM 60 N N . VAL B 1 2 ? 2.709 10.830 -1.506 1.00 14.21 ? 2 VAL B N 1
ATOM 61 C CA . VAL B 1 2 ? 2.235 9.471 -1.403 1.00 13.12 ? 2 VAL B CA 1
ATOM 62 C C . VAL B 1 2 ? 2.935 8.988 -0.129 1.00 12.71 ? 2 VAL B C 1
ATOM 63 O O . VAL B 1 2 ? 4.150 9.198 0.021 1.00 12.15 ? 2 VAL B O 1
ATOM 64 C CB . VAL B 1 2 ? 2.682 8.551 -2.642 1.00 13.14 ? 2 VAL B CB 1
ATOM 65 C CG1 . VAL B 1 2 ? 2.077 7.129 -2.569 1.00 13.17 ? 2 VAL B CG1 1
ATOM 66 C CG2 . VAL B 1 2 ? 2.361 9.149 -3.996 1.00 12.75 ? 2 VAL B CG2 1
ATOM 67 N N . GLY B 1 3 ? 2.198 8.320 0.771 1.00 11.96 ? 3 GLY B N 1
ATOM 68 C CA . GLY B 1 3 ? 2.783 7.853 2.044 1.00 11.28 ? 3 GLY B CA 1
ATOM 69 C C . GLY B 1 3 ? 2.005 6.725 2.713 1.00 10.91 ? 3 GLY B C 1
ATOM 70 O O . GLY B 1 3 ? 0.799 6.632 2.543 1.00 10.23 ? 3 GLY B O 1
ATOM 71 N N . GLY B 1 4 ? 2.679 5.877 3.488 1.00 10.67 ? 4 GLY B N 1
ATOM 72 C CA . GLY B 1 4 ? 2.005 4.683 4.038 1.00 10.40 ? 4 GLY B CA 1
ATOM 73 C C . GLY B 1 4 ? 2.706 4.006 5.212 1.00 10.29 ? 4 GLY B C 1
ATOM 74 O O . GLY B 1 4 ? 3.931 4.007 5.339 1.00 9.98 ? 4 GLY B O 1
ATOM 75 N N . VAL B 1 5 ? 1.915 3.409 6.085 1.00 9.99 ? 5 VAL B N 1
ATOM 76 C CA . VAL B 1 5 ? 2.451 2.937 7.348 1.00 9.89 ? 5 VAL B CA 1
ATOM 77 C C . VAL B 1 5 ? 1.836 1.608 7.693 1.00 9.71 ? 5 VAL B C 1
ATOM 78 O O . VAL B 1 5 ? 0.677 1.378 7.384 1.00 9.72 ? 5 VAL B O 1
ATOM 79 C CB . VAL B 1 5 ? 2.163 3.991 8.471 1.00 10.01 ? 5 VAL B CB 1
ATOM 80 C CG1 . VAL B 1 5 ? 2.715 5.393 8.053 1.00 9.90 ? 5 VAL B CG1 1
ATOM 81 C CG2 . VAL B 1 5 ? 0.645 4.122 8.784 1.00 9.84 ? 5 VAL B CG2 1
ATOM 82 N N . VAL B 1 6 ? 2.617 0.743 8.324 1.00 9.94 ? 6 VAL B N 1
ATOM 83 C CA . VAL B 1 6 ? 2.170 -0.548 8.850 1.00 10.31 ? 6 VAL B CA 1
ATOM 84 C C . VAL B 1 6 ? 2.759 -0.860 10.224 1.00 10.78 ? 6 VAL B C 1
ATOM 85 O O . VAL B 1 6 ? 3.957 -0.636 10.476 1.00 10.52 ? 6 VAL B O 1
ATOM 86 C CB . VAL B 1 6 ? 2.572 -1.699 7.897 1.00 10.49 ? 6 VAL B CB 1
ATOM 87 C CG1 . VAL B 1 6 ? 4.059 -1.820 7.839 1.00 10.64 ? 6 VAL B CG1 1
ATOM 88 C CG2 . VAL B 1 6 ? 2.019 -3.026 8.334 1.00 10.51 ? 6 VAL B CG2 1
ATOM 89 N N . ILE B 1 7 ? 1.899 -1.384 11.114 1.00 11.34 ? 7 ILE B N 1
ATOM 90 C CA . ILE B 1 7 ? 2.291 -2.030 12.400 1.00 11.31 ? 7 ILE B CA 1
ATOM 91 C C . ILE B 1 7 ? 1.730 -3.445 12.459 1.00 11.44 ? 7 ILE B C 1
ATOM 92 O O . ILE B 1 7 ? 0.517 -3.657 12.452 1.00 11.51 ? 7 ILE B O 1
ATOM 93 C CB . ILE B 1 7 ? 1.756 -1.300 13.629 1.00 11.25 ? 7 ILE B CB 1
ATOM 94 C CG1 . ILE B 1 7 ? 2.144 0.186 13.613 1.00 11.17 ? 7 ILE B CG1 1
ATOM 95 C CG2 . ILE B 1 7 ? 2.270 -2.038 14.889 1.00 11.65 ? 7 ILE B CG2 1
ATOM 96 C CD1 . ILE B 1 7 ? 1.572 1.003 14.732 1.00 10.60 ? 7 ILE B CD1 1
ATOM 97 N N . ALA B 1 8 ? 2.589 -4.423 12.466 1.00 11.75 ? 8 ALA B N 1
ATOM 98 C CA . ALA B 1 8 ? 2.102 -5.745 12.228 1.00 12.37 ? 8 ALA B CA 1
ATOM 99 C C . ALA B 1 8 ? 2.648 -6.747 13.218 1.00 13.08 ? 8 ALA B C 1
ATOM 100 O O . ALA B 1 8 ? 1.895 -7.678 13.538 1.00 13.83 ? 8 ALA B O 1
ATOM 101 C CB . ALA B 1 8 ? 2.433 -6.162 10.816 1.00 12.22 ? 8 ALA B CB 1
ATOM 102 O OXT . ALA B 1 8 ? 3.804 -6.675 13.687 1.00 13.32 ? 8 ALA B OXT 1
ATOM 103 N N . MET C 1 1 ? -5.412 -5.314 24.246 1.00 14.56 ? 1 MET C N 1
ATOM 104 C CA . MET C 1 1 ? -4.676 -4.964 23.020 1.00 13.74 ? 1 MET C CA 1
ATOM 105 C C . MET C 1 1 ? -5.350 -3.717 22.489 1.00 12.56 ? 1 MET C C 1
ATOM 106 O O . MET C 1 1 ? -6.570 -3.677 22.276 1.00 12.84 ? 1 MET C O 1
ATOM 107 C CB . MET C 1 1 ? -4.782 -6.127 22.034 1.00 15.05 ? 1 MET C CB 1
ATOM 108 C CG . MET C 1 1 ? -4.340 -5.798 20.625 1.00 16.79 ? 1 MET C CG 1
ATOM 109 S SD . MET C 1 1 ? -5.676 -5.274 19.508 1.00 19.14 ? 1 MET C SD 1
ATOM 110 C CE . MET C 1 1 ? -4.584 -4.448 18.314 1.00 17.55 ? 1 MET C CE 1
ATOM 111 N N . VAL C 1 2 ? -4.577 -2.696 22.294 1.00 10.73 ? 2 VAL C N 1
ATOM 112 C CA . VAL C 1 2 ? -5.133 -1.437 21.933 1.00 10.01 ? 2 VAL C CA 1
ATOM 113 C C . VAL C 1 2 ? -4.381 -0.886 20.673 1.00 9.47 ? 2 VAL C C 1
ATOM 114 O O . VAL C 1 2 ? -3.157 -0.809 20.661 1.00 9.13 ? 2 VAL C O 1
ATOM 115 C CB . VAL C 1 2 ? -4.966 -0.440 23.163 1.00 9.84 ? 2 VAL C CB 1
ATOM 116 C CG1 . VAL C 1 2 ? -5.442 1.012 22.859 1.00 9.42 ? 2 VAL C CG1 1
ATOM 117 C CG2 . VAL C 1 2 ? -5.569 -0.998 24.415 1.00 9.92 ? 2 VAL C CG2 1
ATOM 118 N N . GLY C 1 3 ? -5.130 -0.509 19.635 1.00 9.28 ? 3 GLY C N 1
ATOM 119 C CA . GLY C 1 3 ? -4.577 0.073 18.426 1.00 9.14 ? 3 GLY C CA 1
ATOM 120 C C . GLY C 1 3 ? -5.285 1.332 17.987 1.00 9.29 ? 3 GLY C C 1
ATOM 121 O O . GLY C 1 3 ? -6.497 1.479 18.161 1.00 9.23 ? 3 GLY C O 1
ATOM 122 N N . GLY C 1 4 ? -4.538 2.257 17.399 1.00 9.22 ? 4 GLY C N 1
ATOM 123 C CA . GLY C 1 4 ? -5.155 3.447 16.815 1.00 9.36 ? 4 GLY C CA 1
ATOM 124 C C . GLY C 1 4 ? -4.433 3.904 15.560 1.00 9.48 ? 4 GLY C C 1
ATOM 125 O O . GLY C 1 4 ? -3.196 3.741 15.447 1.00 9.16 ? 4 GLY C O 1
ATOM 126 N N . VAL C 1 5 ? -5.192 4.485 14.628 1.00 9.77 ? 5 VAL C N 1
ATOM 127 C CA . VAL C 1 5 ? -4.608 4.966 13.339 1.00 9.96 ? 5 VAL C CA 1
ATOM 128 C C . VAL C 1 5 ? -5.199 6.288 12.885 1.00 10.04 ? 5 VAL C C 1
ATOM 129 O O . VAL C 1 5 ? -6.366 6.516 13.080 1.00 9.79 ? 5 VAL C O 1
ATOM 130 C CB . VAL C 1 5 ? -4.777 3.854 12.218 1.00 9.91 ? 5 VAL C CB 1
ATOM 131 C CG1 . VAL C 1 5 ? -6.190 3.402 12.098 1.00 9.88 ? 5 VAL C CG1 1
ATOM 132 C CG2 . VAL C 1 5 ? -4.248 4.297 10.827 1.00 10.17 ? 5 VAL C CG2 1
ATOM 133 N N . VAL C 1 6 ? -4.414 7.161 12.270 1.00 10.63 ? 6 VAL C N 1
ATOM 134 C CA . VAL C 1 6 ? -4.989 8.371 11.634 1.00 11.44 ? 6 VAL C CA 1
ATOM 135 C C . VAL C 1 6 ? -4.336 8.953 10.361 1.00 12.07 ? 6 VAL C C 1
ATOM 136 O O . VAL C 1 6 ? -3.110 8.870 10.143 1.00 11.71 ? 6 VAL C O 1
ATOM 137 C CB . VAL C 1 6 ? -5.149 9.613 12.631 1.00 11.59 ? 6 VAL C CB 1
ATOM 138 C CG1 . VAL C 1 6 ? -5.998 9.247 13.755 1.00 11.59 ? 6 VAL C CG1 1
ATOM 139 C CG2 . VAL C 1 6 ? -3.807 10.143 13.131 1.00 11.60 ? 6 VAL C CG2 1
ATOM 140 N N . ILE C 1 7 ? -5.202 9.575 9.549 1.00 12.93 ? 7 ILE C N 1
ATOM 141 C CA . ILE C 1 7 ? -4.833 10.590 8.554 1.00 13.91 ? 7 ILE C CA 1
ATOM 142 C C . ILE C 1 7 ? -5.995 11.523 8.823 1.00 15.37 ? 7 ILE C C 1
ATOM 143 O O . ILE C 1 7 ? -7.117 11.027 8.791 1.00 16.57 ? 7 ILE C O 1
ATOM 144 C CB . ILE C 1 7 ? -4.983 10.034 7.117 1.00 13.66 ? 7 ILE C CB 1
ATOM 145 C CG1 . ILE C 1 7 ? -4.584 8.553 7.058 1.00 13.14 ? 7 ILE C CG1 1
ATOM 146 C CG2 . ILE C 1 7 ? -4.214 10.920 6.091 1.00 13.58 ? 7 ILE C CG2 1
ATOM 147 C CD1 . ILE C 1 7 ? -5.054 7.762 5.856 1.00 13.31 ? 7 ILE C CD1 1
ATOM 148 N N . ALA C 1 8 ? -5.836 12.807 9.177 1.00 16.43 ? 8 ALA C N 1
ATOM 149 C CA . ALA C 1 8 ? -4.588 13.494 9.465 1.00 17.05 ? 8 ALA C CA 1
ATOM 150 C C . ALA C 1 8 ? -4.832 14.375 10.668 1.00 17.77 ? 8 ALA C C 1
ATOM 151 O O . ALA C 1 8 ? -4.936 15.560 10.357 1.00 18.12 ? 8 ALA C O 1
ATOM 152 C CB . ALA C 1 8 ? -4.228 14.428 8.303 1.00 17.26 ? 8 ALA C CB 1
ATOM 153 O OXT . ALA C 1 8 ? -4.945 14.028 11.862 1.00 17.28 ? 8 ALA C OXT 1
ATOM 154 N N . MET D 1 1 ? -2.257 -5.480 13.666 1.00 12.68 ? 1 MET G N 1
ATOM 155 C CA . MET D 1 1 ? -2.116 -4.886 12.322 1.00 12.35 ? 1 MET G CA 1
ATOM 156 C C . MET D 1 1 ? -2.900 -3.602 12.273 1.00 11.21 ? 1 MET G C 1
ATOM 157 O O . MET D 1 1 ? -4.129 -3.568 12.398 1.00 10.99 ? 1 MET G O 1
ATOM 158 C CB . MET D 1 1 ? -2.548 -5.844 11.189 1.00 13.82 ? 1 MET G CB 1
ATOM 159 C CG . MET D 1 1 ? -2.114 -5.377 9.758 1.00 15.67 ? 1 MET G CG 1
ATOM 160 S SD . MET D 1 1 ? -3.256 -4.318 8.752 1.00 17.95 ? 1 MET G SD 1
ATOM 161 C CE . MET D 1 1 ? -2.037 -3.502 7.687 1.00 16.28 ? 1 MET G CE 1
ATOM 162 N N . VAL D 1 2 ? -2.156 -2.546 12.125 1.00 9.91 ? 2 VAL G N 1
ATOM 163 C CA . VAL D 1 2 ? -2.690 -1.281 11.749 1.00 9.14 ? 2 VAL G CA 1
ATOM 164 C C . VAL D 1 2 ? -1.934 -0.844 10.447 1.00 8.63 ? 2 VAL G C 1
ATOM 165 O O . VAL D 1 2 ? -0.701 -1.009 10.321 1.00 8.05 ? 2 VAL G O 1
ATOM 166 C CB . VAL D 1 2 ? -2.469 -0.292 12.908 1.00 9.19 ? 2 VAL G CB 1
ATOM 167 C CG1 . VAL D 1 2 ? -2.972 1.121 12.576 1.00 9.19 ? 2 VAL G CG1 1
ATOM 168 C CG2 . VAL D 1 2 ? -3.100 -0.816 14.170 1.00 9.25 ? 2 VAL G CG2 1
ATOM 169 N N . GLY D 1 3 ? -2.702 -0.338 9.472 1.00 8.17 ? 3 GLY G N 1
ATOM 170 C CA . GLY D 1 3 ? -2.186 0.255 8.255 1.00 7.66 ? 3 GLY G CA 1
ATOM 171 C C . GLY D 1 3 ? -2.865 1.569 7.902 1.00 7.48 ? 3 GLY G C 1
ATOM 172 O O . GLY D 1 3 ? -3.991 1.865 8.332 1.00 7.13 ? 3 GLY G O 1
ATOM 173 N N . GLY D 1 4 ? -2.188 2.383 7.117 1.00 7.20 ? 4 GLY G N 1
ATOM 174 C CA . GLY D 1 4 ? -2.872 3.523 6.516 1.00 7.26 ? 4 GLY G CA 1
ATOM 175 C C . GLY D 1 4 ? -2.118 3.990 5.311 1.00 7.32 ? 4 GLY G C 1
ATOM 176 O O . GLY D 1 4 ? -0.887 3.790 5.225 1.00 7.09 ? 4 GLY G O 1
ATOM 177 N N . VAL D 1 5 ? -2.827 4.629 4.388 1.00 7.47 ? 5 VAL G N 1
ATOM 178 C CA . VAL D 1 5 ? -2.155 5.204 3.220 1.00 7.62 ? 5 VAL G CA 1
ATOM 179 C C . VAL D 1 5 ? -2.828 6.446 2.711 1.00 7.88 ? 5 VAL G C 1
ATOM 180 O O . VAL D 1 5 ? -4.047 6.496 2.633 1.00 7.66 ? 5 VAL G O 1
ATOM 181 C CB . VAL D 1 5 ? -2.113 4.160 2.055 1.00 7.62 ? 5 VAL G CB 1
ATOM 182 C CG1 . VAL D 1 5 ? -3.431 3.534 1.878 1.00 7.53 ? 5 VAL G CG1 1
ATOM 183 C CG2 . VAL D 1 5 ? -1.564 4.806 0.665 1.00 7.88 ? 5 VAL G CG2 1
ATOM 184 N N . VAL D 1 6 ? -2.035 7.439 2.336 1.00 8.31 ? 6 VAL G N 1
ATOM 185 C CA . VAL D 1 6 ? -2.552 8.573 1.576 1.00 8.92 ? 6 VAL G CA 1
ATOM 186 C C . VAL D 1 6 ? -1.928 8.965 0.208 1.00 9.49 ? 6 VAL G C 1
ATOM 187 O O . VAL D 1 6 ? -0.725 8.731 -0.070 1.00 9.15 ? 6 VAL G O 1
ATOM 188 C CB . VAL D 1 6 ? -2.701 9.871 2.462 1.00 8.95 ? 6 VAL G CB 1
ATOM 189 C CG1 . VAL D 1 6 ? -4.047 9.873 3.053 1.00 8.98 ? 6 VAL G CG1 1
ATOM 190 C CG2 . VAL D 1 6 ? -1.663 9.936 3.550 1.00 8.80 ? 6 VAL G CG2 1
ATOM 191 N N . ILE D 1 7 ? -2.788 9.574 -0.633 1.00 10.15 ? 7 ILE G N 1
ATOM 192 C CA . ILE D 1 7 ? -2.374 10.474 -1.725 1.00 10.88 ? 7 ILE G CA 1
ATOM 193 C C . ILE D 1 7 ? -3.295 11.667 -1.622 1.00 11.86 ? 7 ILE G C 1
ATOM 194 O O . ILE D 1 7 ? -4.509 11.448 -1.614 1.00 12.69 ? 7 ILE G O 1
ATOM 195 C CB . ILE D 1 7 ? -2.706 9.909 -3.122 1.00 10.70 ? 7 ILE G CB 1
ATOM 196 C CG1 . ILE D 1 7 ? -2.207 8.469 -3.282 1.00 10.26 ? 7 ILE G CG1 1
ATOM 197 C CG2 . ILE D 1 7 ? -2.137 10.840 -4.204 1.00 10.45 ? 7 ILE G CG2 1
ATOM 198 C CD1 . ILE D 1 7 ? -3.059 7.614 -4.173 1.00 10.65 ? 7 ILE G CD1 1
ATOM 199 N N . ALA D 1 8 ? -2.839 12.904 -1.465 1.00 12.43 ? 8 ALA G N 1
ATOM 200 C CA . ALA D 1 8 ? -1.621 13.318 -0.824 1.00 13.44 ? 8 ALA G CA 1
ATOM 201 C C . ALA D 1 8 ? -2.170 13.994 0.399 1.00 14.14 ? 8 ALA G C 1
ATOM 202 O O . ALA D 1 8 ? -2.957 14.894 0.149 1.00 14.13 ? 8 ALA G O 1
ATOM 203 C CB . ALA D 1 8 ? -0.905 14.424 -1.663 1.00 13.60 ? 8 ALA G CB 1
ATOM 204 O OXT . ALA D 1 8 ? -1.845 13.754 1.560 1.00 14.67 ? 8 ALA G OXT 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MET 1 1 1 MET MET A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 GLY 3 3 3 GLY GLY A . n
A 1 4 GLY 4 4 4 GLY GLY A . n
A 1 5 VAL 5 5 5 VAL VAL A . n
A 1 6 VAL 6 6 6 VAL VAL A . n
A 1 7 ILE 7 7 7 ILE ILE A . n
A 1 8 ALA 8 8 8 ALA ALA A . n
B 1 1 MET 1 1 1 MET MET B . n
B 1 2 VAL 2 2 2 VAL VAL B . n
B 1 3 GLY 3 3 3 GLY GLY B . n
B 1 4 GLY 4 4 4 GLY GLY B . n
B 1 5 VAL 5 5 5 VAL VAL B . n
B 1 6 VAL 6 6 6 VAL VAL B . n
B 1 7 ILE 7 7 7 ILE ILE B . n
B 1 8 ALA 8 8 8 ALA ALA B . n
C 1 1 MET 1 1 1 MET MET C . n
C 1 2 VAL 2 2 2 VAL VAL C . n
C 1 3 GLY 3 3 3 GLY GLY C . n
C 1 4 GLY 4 4 4 GLY GLY C . n
C 1 5 VAL 5 5 5 VAL VAL C . n
C 1 6 VAL 6 6 6 VAL VAL C . n
C 1 7 ILE 7 7 7 ILE ILE C . n
C 1 8 ALA 8 8 8 ALA ALA C . n
D 1 1 MET 1 1 1 MET MET G . n
D 1 2 VAL 2 2 2 VAL VAL G . n
D 1 3 GLY 3 3 3 GLY GLY G . n
D 1 4 GLY 4 4 4 GLY GLY G . n
D 1 5 VAL 5 5 5 VAL VAL G . n
D 1 6 VAL 6 6 6 VAL VAL G . n
D 1 7 ILE 7 7 7 ILE ILE G . n
D 1 8 ALA 8 8 8 ALA ALA G . n
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 2070 ?
1 MORE -19.0 ?
1 'SSA (A^2)' 3220 ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_pdbx_audit_revision_history.ordinal 1
_pdbx_audit_revision_history.data_content_type 'Structure model'
_pdbx_audit_revision_history.major_revision 1
_pdbx_audit_revision_history.minor_revision 0
_pdbx_audit_revision_history.revision_date 2011-11-02
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.6.0085 ? 1
XDS 'data reduction' . ? 2
XSCALE 'data scaling' . ? 3
PHASER phasing . ? 4
#
_pdbx_entry_details.entry_id 2Y3L
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details
;AMYLOID BETA PEPTIDE (AB) IS A PROTEOLYTIC PRODUCT OF THE
AMYLOID PRECURSOR PROTEIN (APP). AB SEGMENT 35-MVGGVVIA-42
CORRESPONDS TO RESIDUES 706-713 OF APP
;
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 N
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 VAL
_pdbx_validate_symm_contact.auth_seq_id_1 2
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 O
_pdbx_validate_symm_contact.auth_asym_id_2 C
_pdbx_validate_symm_contact.auth_comp_id_2 ILE
_pdbx_validate_symm_contact.auth_seq_id_2 7
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 1_655
_pdbx_validate_symm_contact.dist 2.19
#