data_4LTH # _entry.id 4LTH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4LTH pdb_00004lth 10.2210/pdb4lth/pdb NDB NA2617 ? ? RCSB RCSB081065 ? ? WWPDB D_1000081065 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3QRN 'High resolution hydrated structure' unspecified PDB 4LTG . unspecified PDB 4LTF . unspecified PDB 4LTI . unspecified PDB 4LTJ . unspecified PDB 4LTK . unspecified PDB 4LTL . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4LTH _pdbx_database_status.recvd_initial_deposition_date 2013-07-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hall, J.P.' 1 'Sanchez-Weatherby, J.' 2 'Cardin, C.J.' 3 # _citation.id primary _citation.title 'Controlled Dehydration of a Ruthenium Complex-DNA Crystal Induces Reversible DNA Kinking.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 136 _citation.page_first 17505 _citation.page_last 17512 _citation.year 2014 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25393319 _citation.pdbx_database_id_DOI 10.1021/ja508745x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hall, J.P.' 1 ? primary 'Sanchez-Weatherby, J.' 2 ? primary 'Alberti, C.' 3 ? primary 'Quimper, C.H.' 4 ? primary ;O'Sullivan, K. ; 5 ? primary 'Brazier, J.A.' 6 ? primary 'Winter, G.' 7 ? primary 'Sorensen, T.' 8 ? primary 'Kelly, J.M.' 9 ? primary 'Cardin, D.J.' 10 ? primary 'Cardin, C.J.' 11 ? # _cell.entry_id 4LTH _cell.length_a 42.980 _cell.length_b 42.980 _cell.length_c 39.420 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LTH _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn DNA 3045.992 1 ? ? ? ? 2 non-polymer syn 'Ru(tap)2(dppz) complex' 747.732 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 4 water nat water 18.015 33 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCGGCGCCGA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA synthesised by ATDBio' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4LTH _struct_ref.pdbx_db_accession 4LTH _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code TCGGCGCCGA _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LTH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4LTH _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 RKL non-polymer . 'Ru(tap)2(dppz) complex' ? 'C38 H22 N12 Ru 2' 747.732 # _exptl.entry_id 4LTH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.99 _exptl_crystal.density_percent_sol 58.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details ;1ul 1mM d(TCGGCGCCGA)2, 1ul 4mM lambda-[Ru(TAP)2(dppz)]2+, 6ul 12mM spermine, 10% MPD, 40mM sodium cacodylate, 80mM KCl, 20mM BaCl2. Equilibriated against 1ml 35% MPD. Crystal was rehydrated to 97% relative humidity on the beamline using the HC1b., pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-12-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'dual Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8266 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8266 # _reflns.entry_id 4LTH _reflns.observed_criterion_sigma_I 2.7 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.39 _reflns.d_resolution_high 1.60 _reflns.number_obs 4564 _reflns.number_all 4564 _reflns.percent_possible_obs 88.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.64 _reflns_shell.percent_possible_all 91.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4LTH _refine.ls_number_reflns_obs 4341 _refine.ls_number_reflns_all 4341 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.39 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 87.07 _refine.ls_R_factor_obs 0.14646 _refine.ls_R_factor_all 0.14646 _refine.ls_R_factor_R_work 0.14516 _refine.ls_R_factor_R_free 0.17432 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 210 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.966 _refine.B_iso_mean 29.108 _refine.aniso_B[1][1] -0.07 _refine.aniso_B[2][2] -0.07 _refine.aniso_B[3][3] 0.13 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3QRN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.074 _refine.pdbx_overall_ESU_R_Free 0.076 _refine.overall_SU_ML 0.047 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.408 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 287 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 30.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.017 0.013 ? 290 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.002 0.020 ? 134 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.995 1.598 ? 456 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.661 3.000 ? 308 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.067 0.200 ? 30 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.026 0.020 ? 176 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.003 0.020 ? 78 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 2.803 2.829 ? 290 ? 'X-RAY DIFFRACTION' r_scbond_other 2.799 2.831 ? 291 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 4.173 4.227 ? 457 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 5.429 30.835 ? 644 ? 'X-RAY DIFFRACTION' r_long_range_B_other 5.359 30.748 ? 637 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.642 _refine_ls_shell.number_reflns_R_work 319 _refine_ls_shell.R_factor_R_work 0.205 _refine_ls_shell.percent_reflns_obs 90.03 _refine_ls_shell.R_factor_R_free 0.206 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4LTH _struct.title 'Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (3/7)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LTH _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Dehydration, HC1b, Kinking, ruthenium, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 C BA . BA ? ? A DG 4 A BA 102 1_555 ? ? ? ? ? ? ? 2.892 ? ? metalc2 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 201 1_555 ? ? ? ? ? ? ? 2.897 ? ? metalc3 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 203 1_555 ? ? ? ? ? ? ? 2.958 ? ? metalc4 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 207 1_555 ? ? ? ? ? ? ? 2.817 ? ? metalc5 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 219 1_555 ? ? ? ? ? ? ? 2.888 ? ? metalc6 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 220 1_555 ? ? ? ? ? ? ? 2.763 ? ? metalc7 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 221 1_555 ? ? ? ? ? ? ? 2.867 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 5 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 5 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 5 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 6 A DC 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 6 A DC 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 6 A DC 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A RKL 101 ? 10 'BINDING SITE FOR RESIDUE RKL A 101' AC2 Software A BA 102 ? 8 'BINDING SITE FOR RESIDUE BA A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DT A 1 ? DT A 1 . ? 7_555 ? 2 AC1 10 DC A 2 ? DC A 2 . ? 7_555 ? 3 AC1 10 DG A 3 ? DG A 3 . ? 5_444 ? 4 AC1 10 DG A 3 ? DG A 3 . ? 7_555 ? 5 AC1 10 DG A 4 ? DG A 4 . ? 5_444 ? 6 AC1 10 DC A 5 ? DC A 5 . ? 5_444 ? 7 AC1 10 DC A 7 ? DC A 7 . ? 3_444 ? 8 AC1 10 DC A 8 ? DC A 8 . ? 3_444 ? 9 AC1 10 DG A 9 ? DG A 9 . ? 1_555 ? 10 AC1 10 DA A 10 ? DA A 10 . ? 3_444 ? 11 AC2 8 DG A 3 ? DG A 3 . ? 1_555 ? 12 AC2 8 DG A 4 ? DG A 4 . ? 1_555 ? 13 AC2 8 HOH D . ? HOH A 201 . ? 1_555 ? 14 AC2 8 HOH D . ? HOH A 203 . ? 1_555 ? 15 AC2 8 HOH D . ? HOH A 207 . ? 1_555 ? 16 AC2 8 HOH D . ? HOH A 219 . ? 1_555 ? 17 AC2 8 HOH D . ? HOH A 220 . ? 1_555 ? 18 AC2 8 HOH D . ? HOH A 221 . ? 1_555 ? # _database_PDB_matrix.entry_id 4LTH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4LTH _atom_sites.fract_transf_matrix[1][1] 0.023267 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023267 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025368 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C N O P RU # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DT A 1 1 ? -18.667 -15.237 15.185 1.00 47.75 ? 1 DT A "O5'" 1 ATOM 2 C "C5'" . DT A 1 1 ? -20.067 -15.174 14.861 1.00 43.03 ? 1 DT A "C5'" 1 ATOM 3 C "C4'" . DT A 1 1 ? -20.342 -13.914 14.071 1.00 35.92 ? 1 DT A "C4'" 1 ATOM 4 O "O4'" . DT A 1 1 ? -20.127 -12.749 14.897 1.00 35.26 ? 1 DT A "O4'" 1 ATOM 5 C "C3'" . DT A 1 1 ? -19.432 -13.693 12.863 1.00 35.45 ? 1 DT A "C3'" 1 ATOM 6 O "O3'" . DT A 1 1 ? -19.996 -14.411 11.763 1.00 34.29 ? 1 DT A "O3'" 1 ATOM 7 C "C2'" . DT A 1 1 ? -19.507 -12.193 12.671 1.00 36.07 ? 1 DT A "C2'" 1 ATOM 8 C "C1'" . DT A 1 1 ? -19.756 -11.653 14.087 1.00 32.90 ? 1 DT A "C1'" 1 ATOM 9 N N1 . DT A 1 1 ? -18.583 -11.033 14.704 1.00 32.84 ? 1 DT A N1 1 ATOM 10 C C2 . DT A 1 1 ? -18.761 -9.949 15.541 1.00 32.51 ? 1 DT A C2 1 ATOM 11 O O2 . DT A 1 1 ? -19.843 -9.427 15.741 1.00 28.21 ? 1 DT A O2 1 ATOM 12 N N3 . DT A 1 1 ? -17.604 -9.449 16.080 1.00 33.13 ? 1 DT A N3 1 ATOM 13 C C4 . DT A 1 1 ? -16.321 -9.930 15.892 1.00 41.18 ? 1 DT A C4 1 ATOM 14 O O4 . DT A 1 1 ? -15.376 -9.372 16.433 1.00 43.81 ? 1 DT A O4 1 ATOM 15 C C5 . DT A 1 1 ? -16.209 -11.063 15.001 1.00 41.55 ? 1 DT A C5 1 ATOM 16 C C7 . DT A 1 1 ? -14.856 -11.636 14.721 1.00 48.34 ? 1 DT A C7 1 ATOM 17 C C6 . DT A 1 1 ? -17.333 -11.574 14.489 1.00 39.90 ? 1 DT A C6 1 ATOM 18 P P . DC A 1 2 ? -19.191 -14.601 10.355 1.00 36.65 ? 2 DC A P 1 ATOM 19 O OP1 . DC A 1 2 ? -19.885 -15.660 9.582 1.00 36.25 ? 2 DC A OP1 1 ATOM 20 O OP2 . DC A 1 2 ? -17.728 -14.627 10.630 1.00 36.65 ? 2 DC A OP2 1 ATOM 21 O "O5'" . DC A 1 2 ? -19.472 -13.225 9.585 1.00 30.60 ? 2 DC A "O5'" 1 ATOM 22 C "C5'" . DC A 1 2 ? -20.777 -12.819 9.215 1.00 29.17 ? 2 DC A "C5'" 1 ATOM 23 C "C4'" . DC A 1 2 ? -20.703 -11.600 8.330 1.00 24.47 ? 2 DC A "C4'" 1 ATOM 24 O "O4'" . DC A 1 2 ? -20.101 -10.518 9.050 1.00 27.26 ? 2 DC A "O4'" 1 ATOM 25 C "C3'" . DC A 1 2 ? -19.841 -11.787 7.091 1.00 21.79 ? 2 DC A "C3'" 1 ATOM 26 O "O3'" . DC A 1 2 ? -20.737 -12.269 6.103 1.00 26.39 ? 2 DC A "O3'" 1 ATOM 27 C "C2'" . DC A 1 2 ? -19.290 -10.411 6.813 1.00 23.00 ? 2 DC A "C2'" 1 ATOM 28 C "C1'" . DC A 1 2 ? -19.325 -9.719 8.175 1.00 25.54 ? 2 DC A "C1'" 1 ATOM 29 N N1 . DC A 1 2 ? -18.024 -9.546 8.821 1.00 23.97 ? 2 DC A N1 1 ATOM 30 C C2 . DC A 1 2 ? -17.666 -8.285 9.279 1.00 25.75 ? 2 DC A C2 1 ATOM 31 O O2 . DC A 1 2 ? -18.436 -7.333 9.073 1.00 26.06 ? 2 DC A O2 1 ATOM 32 N N3 . DC A 1 2 ? -16.493 -8.128 9.935 1.00 25.46 ? 2 DC A N3 1 ATOM 33 C C4 . DC A 1 2 ? -15.684 -9.179 10.122 1.00 24.12 ? 2 DC A C4 1 ATOM 34 N N4 . DC A 1 2 ? -14.544 -8.976 10.768 1.00 26.31 ? 2 DC A N4 1 ATOM 35 C C5 . DC A 1 2 ? -16.028 -10.478 9.668 1.00 22.70 ? 2 DC A C5 1 ATOM 36 C C6 . DC A 1 2 ? -17.196 -10.614 9.016 1.00 24.06 ? 2 DC A C6 1 ATOM 37 P P . DG A 1 3 ? -20.219 -12.624 4.611 1.00 28.02 ? 3 DG A P 1 ATOM 38 O OP1 . DG A 1 3 ? -21.283 -13.451 3.960 1.00 29.04 ? 3 DG A OP1 1 ATOM 39 O OP2 . DG A 1 3 ? -18.848 -13.163 4.674 1.00 26.31 ? 3 DG A OP2 1 ATOM 40 O "O5'" . DG A 1 3 ? -20.229 -11.231 3.877 1.00 25.31 ? 3 DG A "O5'" 1 ATOM 41 C "C5'" . DG A 1 3 ? -21.434 -10.557 3.512 1.00 24.47 ? 3 DG A "C5'" 1 ATOM 42 C "C4'" . DG A 1 3 ? -21.092 -9.187 3.005 1.00 24.19 ? 3 DG A "C4'" 1 ATOM 43 O "O4'" . DG A 1 3 ? -20.511 -8.441 4.096 1.00 25.02 ? 3 DG A "O4'" 1 ATOM 44 C "C3'" . DG A 1 3 ? -20.068 -9.143 1.874 1.00 23.31 ? 3 DG A "C3'" 1 ATOM 45 O "O3'" . DG A 1 3 ? -20.760 -9.146 0.622 1.00 27.48 ? 3 DG A "O3'" 1 ATOM 46 C "C2'" . DG A 1 3 ? -19.323 -7.851 2.119 1.00 22.58 ? 3 DG A "C2'" 1 ATOM 47 C "C1'" . DG A 1 3 ? -19.433 -7.635 3.623 1.00 22.82 ? 3 DG A "C1'" 1 ATOM 48 N N9 . DG A 1 3 ? -18.238 -8.009 4.355 1.00 21.99 ? 3 DG A N9 1 ATOM 49 C C8 . DG A 1 3 ? -17.514 -9.159 4.202 1.00 21.26 ? 3 DG A C8 1 ATOM 50 N N7 . DG A 1 3 ? -16.482 -9.225 4.994 1.00 21.67 ? 3 DG A N7 1 ATOM 51 C C5 . DG A 1 3 ? -16.543 -8.060 5.730 1.00 20.60 ? 3 DG A C5 1 ATOM 52 C C6 . DG A 1 3 ? -15.669 -7.552 6.719 1.00 21.93 ? 3 DG A C6 1 ATOM 53 O O6 . DG A 1 3 ? -14.660 -8.073 7.202 1.00 22.27 ? 3 DG A O6 1 ATOM 54 N N1 . DG A 1 3 ? -16.066 -6.295 7.153 1.00 21.50 ? 3 DG A N1 1 ATOM 55 C C2 . DG A 1 3 ? -17.138 -5.597 6.672 1.00 22.52 ? 3 DG A C2 1 ATOM 56 N N2 . DG A 1 3 ? -17.347 -4.388 7.219 1.00 21.97 ? 3 DG A N2 1 ATOM 57 N N3 . DG A 1 3 ? -17.965 -6.062 5.753 1.00 21.85 ? 3 DG A N3 1 ATOM 58 C C4 . DG A 1 3 ? -17.623 -7.296 5.346 1.00 20.52 ? 3 DG A C4 1 ATOM 59 P P . DG A 1 4 ? -20.097 -9.875 -0.662 1.00 32.17 ? 4 DG A P 1 ATOM 60 O OP1 . DG A 1 4 ? -21.106 -9.873 -1.745 1.00 41.01 ? 4 DG A OP1 1 ATOM 61 O OP2 . DG A 1 4 ? -19.344 -11.013 -0.274 1.00 30.67 ? 4 DG A OP2 1 ATOM 62 O "O5'" . DG A 1 4 ? -18.925 -8.898 -1.091 1.00 28.76 ? 4 DG A "O5'" 1 ATOM 63 C "C5'" . DG A 1 4 ? -19.278 -7.632 -1.640 1.00 28.30 ? 4 DG A "C5'" 1 ATOM 64 C "C4'" . DG A 1 4 ? -18.026 -6.901 -2.041 1.00 26.77 ? 4 DG A "C4'" 1 ATOM 65 O "O4'" . DG A 1 4 ? -17.144 -6.801 -0.881 1.00 26.98 ? 4 DG A "O4'" 1 ATOM 66 C "C3'" . DG A 1 4 ? -17.205 -7.606 -3.115 1.00 26.99 ? 4 DG A "C3'" 1 ATOM 67 O "O3'" . DG A 1 4 ? -16.666 -6.542 -3.872 1.00 30.26 ? 4 DG A "O3'" 1 ATOM 68 C "C2'" . DG A 1 4 ? -16.145 -8.327 -2.326 1.00 26.07 ? 4 DG A "C2'" 1 ATOM 69 C "C1'" . DG A 1 4 ? -15.894 -7.390 -1.153 1.00 25.80 ? 4 DG A "C1'" 1 ATOM 70 N N9 . DG A 1 4 ? -15.429 -8.019 0.069 1.00 23.06 ? 4 DG A N9 1 ATOM 71 C C8 . DG A 1 4 ? -15.877 -9.160 0.666 1.00 22.72 ? 4 DG A C8 1 ATOM 72 N N7 . DG A 1 4 ? -15.227 -9.458 1.754 1.00 21.79 ? 4 DG A N7 1 ATOM 73 C C5 . DG A 1 4 ? -14.335 -8.413 1.914 1.00 20.83 ? 4 DG A C5 1 ATOM 74 C C6 . DG A 1 4 ? -13.402 -8.149 2.947 1.00 19.84 ? 4 DG A C6 1 ATOM 75 O O6 . DG A 1 4 ? -13.168 -8.803 3.951 1.00 22.82 ? 4 DG A O6 1 ATOM 76 N N1 . DG A 1 4 ? -12.694 -6.986 2.712 1.00 20.22 ? 4 DG A N1 1 ATOM 77 C C2 . DG A 1 4 ? -12.913 -6.137 1.656 1.00 20.41 ? 4 DG A C2 1 ATOM 78 N N2 . DG A 1 4 ? -12.135 -5.050 1.594 1.00 21.29 ? 4 DG A N2 1 ATOM 79 N N3 . DG A 1 4 ? -13.785 -6.372 0.689 1.00 21.97 ? 4 DG A N3 1 ATOM 80 C C4 . DG A 1 4 ? -14.471 -7.502 0.897 1.00 22.52 ? 4 DG A C4 1 ATOM 81 P P . DC A 1 5 ? -16.098 -6.814 -5.302 1.00 37.41 ? 5 DC A P 1 ATOM 82 O OP1 . DC A 1 5 ? -17.045 -6.150 -6.248 1.00 43.89 ? 5 DC A OP1 1 ATOM 83 O OP2 . DC A 1 5 ? -15.685 -8.219 -5.432 1.00 41.35 ? 5 DC A OP2 1 ATOM 84 O "O5'" . DC A 1 5 ? -14.742 -5.973 -5.275 1.00 34.29 ? 5 DC A "O5'" 1 ATOM 85 C "C5'" . DC A 1 5 ? -14.743 -4.551 -5.093 1.00 31.97 ? 5 DC A "C5'" 1 ATOM 86 C "C4'" . DC A 1 5 ? -13.374 -4.125 -4.638 1.00 29.86 ? 5 DC A "C4'" 1 ATOM 87 O "O4'" . DC A 1 5 ? -13.166 -4.583 -3.291 1.00 29.17 ? 5 DC A "O4'" 1 ATOM 88 C "C3'" . DC A 1 5 ? -12.224 -4.716 -5.436 1.00 30.15 ? 5 DC A "C3'" 1 ATOM 89 O "O3'" . DC A 1 5 ? -11.867 -3.744 -6.395 1.00 28.25 ? 5 DC A "O3'" 1 ATOM 90 C "C2'" . DC A 1 5 ? -11.084 -4.727 -4.442 1.00 32.81 ? 5 DC A "C2'" 1 ATOM 91 C "C1'" . DC A 1 5 ? -11.774 -4.877 -3.099 1.00 33.33 ? 5 DC A "C1'" 1 ATOM 92 N N1 . DC A 1 5 ? -11.686 -6.182 -2.424 1.00 26.70 ? 5 DC A N1 1 ATOM 93 C C2 . DC A 1 5 ? -10.868 -6.276 -1.291 1.00 25.39 ? 5 DC A C2 1 ATOM 94 O O2 . DC A 1 5 ? -10.118 -5.321 -1.005 1.00 28.88 ? 5 DC A O2 1 ATOM 95 N N3 . DC A 1 5 ? -10.864 -7.424 -0.578 1.00 22.11 ? 5 DC A N3 1 ATOM 96 C C4 . DC A 1 5 ? -11.672 -8.421 -0.921 1.00 22.51 ? 5 DC A C4 1 ATOM 97 N N4 . DC A 1 5 ? -11.682 -9.510 -0.158 1.00 23.32 ? 5 DC A N4 1 ATOM 98 C C5 . DC A 1 5 ? -12.493 -8.361 -2.077 1.00 24.19 ? 5 DC A C5 1 ATOM 99 C C6 . DC A 1 5 ? -12.498 -7.219 -2.772 1.00 24.55 ? 5 DC A C6 1 ATOM 100 P P . DG A 1 6 ? -11.054 -4.138 -7.695 1.00 31.19 ? 6 DG A P 1 ATOM 101 O OP1 . DG A 1 6 ? -11.163 -2.975 -8.627 1.00 35.20 ? 6 DG A OP1 1 ATOM 102 O OP2 . DG A 1 6 ? -11.463 -5.526 -8.074 1.00 32.81 ? 6 DG A OP2 1 ATOM 103 O "O5'" . DG A 1 6 ? -9.590 -4.258 -7.140 1.00 29.70 ? 6 DG A "O5'" 1 ATOM 104 C "C5'" . DG A 1 6 ? -8.856 -3.179 -6.605 1.00 25.80 ? 6 DG A "C5'" 1 ATOM 105 C "C4'" . DG A 1 6 ? -7.468 -3.707 -6.373 1.00 30.09 ? 6 DG A "C4'" 1 ATOM 106 O "O4'" . DG A 1 6 ? -7.553 -4.636 -5.271 1.00 32.51 ? 6 DG A "O4'" 1 ATOM 107 C "C3'" . DG A 1 6 ? -6.847 -4.472 -7.548 1.00 30.94 ? 6 DG A "C3'" 1 ATOM 108 O "O3'" . DG A 1 6 ? -5.504 -4.057 -7.622 1.00 32.16 ? 6 DG A "O3'" 1 ATOM 109 C "C2'" . DG A 1 6 ? -6.939 -5.935 -7.150 1.00 28.88 ? 6 DG A "C2'" 1 ATOM 110 C "C1'" . DG A 1 6 ? -6.985 -5.892 -5.625 1.00 29.84 ? 6 DG A "C1'" 1 ATOM 111 N N9 . DG A 1 6 ? -7.822 -6.933 -5.037 1.00 27.79 ? 6 DG A N9 1 ATOM 112 C C8 . DG A 1 6 ? -8.988 -7.441 -5.554 1.00 27.80 ? 6 DG A C8 1 ATOM 113 N N7 . DG A 1 6 ? -9.487 -8.413 -4.839 1.00 25.75 ? 6 DG A N7 1 ATOM 114 C C5 . DG A 1 6 ? -8.634 -8.510 -3.750 1.00 23.44 ? 6 DG A C5 1 ATOM 115 C C6 . DG A 1 6 ? -8.648 -9.404 -2.643 1.00 24.06 ? 6 DG A C6 1 ATOM 116 O O6 . DG A 1 6 ? -9.462 -10.292 -2.368 1.00 23.51 ? 6 DG A O6 1 ATOM 117 N N1 . DG A 1 6 ? -7.541 -9.227 -1.830 1.00 26.13 ? 6 DG A N1 1 ATOM 118 C C2 . DG A 1 6 ? -6.556 -8.301 -2.029 1.00 28.03 ? 6 DG A C2 1 ATOM 119 N N2 . DG A 1 6 ? -5.613 -8.245 -1.085 1.00 30.62 ? 6 DG A N2 1 ATOM 120 N N3 . DG A 1 6 ? -6.527 -7.460 -3.052 1.00 27.54 ? 6 DG A N3 1 ATOM 121 C C4 . DG A 1 6 ? -7.600 -7.606 -3.857 1.00 27.55 ? 6 DG A C4 1 ATOM 122 P P . DC A 1 7 ? -4.550 -4.511 -8.839 1.00 38.23 ? 7 DC A P 1 ATOM 123 O OP1 . DC A 1 7 ? -3.551 -3.441 -8.998 1.00 41.62 ? 7 DC A OP1 1 ATOM 124 O OP2 . DC A 1 7 ? -5.321 -5.105 -9.933 1.00 35.89 ? 7 DC A OP2 1 ATOM 125 O "O5'" . DC A 1 7 ? -3.698 -5.710 -8.220 1.00 34.01 ? 7 DC A "O5'" 1 ATOM 126 C "C5'" . DC A 1 7 ? -2.855 -5.483 -7.075 1.00 29.76 ? 7 DC A "C5'" 1 ATOM 127 C "C4'" . DC A 1 7 ? -2.411 -6.811 -6.507 1.00 28.07 ? 7 DC A "C4'" 1 ATOM 128 O "O4'" . DC A 1 7 ? -3.532 -7.397 -5.823 1.00 29.69 ? 7 DC A "O4'" 1 ATOM 129 C "C3'" . DC A 1 7 ? -2.020 -7.863 -7.530 1.00 27.67 ? 7 DC A "C3'" 1 ATOM 130 O "O3'" . DC A 1 7 ? -0.660 -7.686 -7.892 1.00 29.15 ? 7 DC A "O3'" 1 ATOM 131 C "C2'" . DC A 1 7 ? -2.203 -9.152 -6.740 1.00 25.61 ? 7 DC A "C2'" 1 ATOM 132 C "C1'" . DC A 1 7 ? -3.277 -8.790 -5.688 1.00 27.91 ? 7 DC A "C1'" 1 ATOM 133 N N1 . DC A 1 7 ? -4.574 -9.470 -5.794 1.00 24.09 ? 7 DC A N1 1 ATOM 134 C C2 . DC A 1 7 ? -5.021 -10.305 -4.757 1.00 24.85 ? 7 DC A C2 1 ATOM 135 O O2 . DC A 1 7 ? -4.297 -10.476 -3.752 1.00 23.52 ? 7 DC A O2 1 ATOM 136 N N3 . DC A 1 7 ? -6.237 -10.884 -4.863 1.00 22.78 ? 7 DC A N3 1 ATOM 137 C C4 . DC A 1 7 ? -7.001 -10.647 -5.931 1.00 23.80 ? 7 DC A C4 1 ATOM 138 N N4 . DC A 1 7 ? -8.182 -11.258 -5.996 1.00 25.37 ? 7 DC A N4 1 ATOM 139 C C5 . DC A 1 7 ? -6.561 -9.813 -7.005 1.00 23.72 ? 7 DC A C5 1 ATOM 140 C C6 . DC A 1 7 ? -5.354 -9.259 -6.897 1.00 23.55 ? 7 DC A C6 1 ATOM 141 P P . DC A 1 8 ? -0.191 -7.935 -9.397 1.00 31.64 ? 8 DC A P 1 ATOM 142 O OP1 . DC A 1 8 ? 1.142 -7.404 -9.566 1.00 32.25 ? 8 DC A OP1 1 ATOM 143 O OP2 . DC A 1 8 ? -1.262 -7.581 -10.334 1.00 35.01 ? 8 DC A OP2 1 ATOM 144 O "O5'" . DC A 1 8 ? -0.164 -9.505 -9.548 1.00 28.79 ? 8 DC A "O5'" 1 ATOM 145 C "C5'" . DC A 1 8 ? 0.764 -10.295 -8.831 1.00 27.72 ? 8 DC A "C5'" 1 ATOM 146 C "C4'" . DC A 1 8 ? 0.497 -11.748 -9.136 1.00 28.55 ? 8 DC A "C4'" 1 ATOM 147 O "O4'" . DC A 1 8 ? -0.785 -12.130 -8.585 1.00 27.54 ? 8 DC A "O4'" 1 ATOM 148 C "C3'" . DC A 1 8 ? 0.426 -12.055 -10.629 1.00 29.81 ? 8 DC A "C3'" 1 ATOM 149 O "O3'" . DC A 1 8 ? 1.684 -12.698 -10.832 1.00 32.28 ? 8 DC A "O3'" 1 ATOM 150 C "C2'" . DC A 1 8 ? -0.751 -13.010 -10.782 1.00 29.60 ? 8 DC A "C2'" 1 ATOM 151 C "C1'" . DC A 1 8 ? -1.309 -13.195 -9.382 1.00 26.76 ? 8 DC A "C1'" 1 ATOM 152 N N1 . DC A 1 8 ? -2.757 -13.085 -9.340 1.00 23.08 ? 8 DC A N1 1 ATOM 153 C C2 . DC A 1 8 ? -3.518 -14.115 -8.769 1.00 23.01 ? 8 DC A C2 1 ATOM 154 O O2 . DC A 1 8 ? -2.956 -15.156 -8.413 1.00 23.38 ? 8 DC A O2 1 ATOM 155 N N3 . DC A 1 8 ? -4.848 -13.958 -8.639 1.00 21.83 ? 8 DC A N3 1 ATOM 156 C C4 . DC A 1 8 ? -5.434 -12.850 -9.105 1.00 23.79 ? 8 DC A C4 1 ATOM 157 N N4 . DC A 1 8 ? -6.750 -12.739 -8.961 1.00 24.30 ? 8 DC A N4 1 ATOM 158 C C5 . DC A 1 8 ? -4.678 -11.772 -9.659 1.00 23.70 ? 8 DC A C5 1 ATOM 159 C C6 . DC A 1 8 ? -3.362 -11.949 -9.788 1.00 22.59 ? 8 DC A C6 1 ATOM 160 P P . DG A 1 9 ? 2.290 -12.952 -12.305 1.00 37.38 ? 9 DG A P 1 ATOM 161 O OP1 . DG A 1 9 ? 3.735 -13.226 -12.119 1.00 40.81 ? 9 DG A OP1 1 ATOM 162 O OP2 . DG A 1 9 ? 1.709 -11.995 -13.239 1.00 37.35 ? 9 DG A OP2 1 ATOM 163 O "O5'" . DG A 1 9 ? 1.646 -14.318 -12.784 1.00 31.54 ? 9 DG A "O5'" 1 ATOM 164 C "C5'" . DG A 1 9 ? 1.972 -15.496 -12.073 1.00 30.05 ? 9 DG A "C5'" 1 ATOM 165 C "C4'" . DG A 1 9 ? 1.072 -16.580 -12.591 1.00 29.40 ? 9 DG A "C4'" 1 ATOM 166 O "O4'" . DG A 1 9 ? -0.304 -16.285 -12.242 1.00 30.20 ? 9 DG A "O4'" 1 ATOM 167 C "C3'" . DG A 1 9 ? 1.082 -16.671 -14.113 1.00 32.74 ? 9 DG A "C3'" 1 ATOM 168 O "O3'" . DG A 1 9 ? 0.837 -18.051 -14.371 1.00 43.06 ? 9 DG A "O3'" 1 ATOM 169 C "C2'" . DG A 1 9 ? -0.133 -15.862 -14.517 1.00 29.28 ? 9 DG A "C2'" 1 ATOM 170 C "C1'" . DG A 1 9 ? -1.082 -16.282 -13.427 1.00 28.31 ? 9 DG A "C1'" 1 ATOM 171 N N9 . DG A 1 9 ? -2.225 -15.412 -13.216 1.00 28.52 ? 9 DG A N9 1 ATOM 172 C C8 . DG A 1 9 ? -2.488 -14.179 -13.760 1.00 26.10 ? 9 DG A C8 1 ATOM 173 N N7 . DG A 1 9 ? -3.652 -13.700 -13.407 1.00 27.80 ? 9 DG A N7 1 ATOM 174 C C5 . DG A 1 9 ? -4.193 -14.689 -12.594 1.00 26.62 ? 9 DG A C5 1 ATOM 175 C C6 . DG A 1 9 ? -5.436 -14.748 -11.922 1.00 26.23 ? 9 DG A C6 1 ATOM 176 O O6 . DG A 1 9 ? -6.365 -13.928 -11.951 1.00 25.68 ? 9 DG A O6 1 ATOM 177 N N1 . DG A 1 9 ? -5.588 -15.951 -11.231 1.00 22.96 ? 9 DG A N1 1 ATOM 178 C C2 . DG A 1 9 ? -4.647 -16.943 -11.164 1.00 21.06 ? 9 DG A C2 1 ATOM 179 N N2 . DG A 1 9 ? -4.958 -18.019 -10.440 1.00 24.22 ? 9 DG A N2 1 ATOM 180 N N3 . DG A 1 9 ? -3.490 -16.904 -11.795 1.00 24.52 ? 9 DG A N3 1 ATOM 181 C C4 . DG A 1 9 ? -3.329 -15.756 -12.485 1.00 26.52 ? 9 DG A C4 1 ATOM 182 P P . DA A 1 10 ? 1.885 -18.951 -15.172 1.00 51.79 ? 10 DA A P 1 ATOM 183 O OP1 . DA A 1 10 ? 2.396 -18.156 -16.325 1.00 49.62 ? 10 DA A OP1 1 ATOM 184 O OP2 . DA A 1 10 ? 1.275 -20.322 -15.239 1.00 48.07 ? 10 DA A OP2 1 ATOM 185 O "O5'" . DA A 1 10 ? 3.239 -18.873 -14.339 1.00 43.46 ? 10 DA A "O5'" 1 ATOM 186 C "C5'" . DA A 1 10 ? 3.551 -19.907 -13.413 1.00 46.96 ? 10 DA A "C5'" 1 ATOM 187 C "C4'" . DA A 1 10 ? 4.767 -19.466 -12.646 1.00 47.67 ? 10 DA A "C4'" 1 ATOM 188 O "O4'" . DA A 1 10 ? 4.412 -18.274 -11.884 1.00 44.45 ? 10 DA A "O4'" 1 ATOM 189 C "C3'" . DA A 1 10 ? 5.262 -20.499 -11.632 1.00 51.19 ? 10 DA A "C3'" 1 ATOM 190 O "O3'" . DA A 1 10 ? 6.689 -20.383 -11.462 1.00 66.01 ? 10 DA A "O3'" 1 ATOM 191 C "C2'" . DA A 1 10 ? 4.541 -20.075 -10.371 1.00 45.87 ? 10 DA A "C2'" 1 ATOM 192 C "C1'" . DA A 1 10 ? 4.618 -18.553 -10.508 1.00 40.30 ? 10 DA A "C1'" 1 ATOM 193 N N9 . DA A 1 10 ? 3.617 -17.831 -9.728 1.00 34.53 ? 10 DA A N9 1 ATOM 194 C C8 . DA A 1 10 ? 2.381 -18.271 -9.330 1.00 35.79 ? 10 DA A C8 1 ATOM 195 N N7 . DA A 1 10 ? 1.725 -17.409 -8.597 1.00 29.08 ? 10 DA A N7 1 ATOM 196 C C5 . DA A 1 10 ? 2.596 -16.340 -8.486 1.00 26.44 ? 10 DA A C5 1 ATOM 197 C C6 . DA A 1 10 ? 2.503 -15.126 -7.810 1.00 27.28 ? 10 DA A C6 1 ATOM 198 N N6 . DA A 1 10 ? 1.429 -14.755 -7.129 1.00 26.51 ? 10 DA A N6 1 ATOM 199 N N1 . DA A 1 10 ? 3.526 -14.254 -7.936 1.00 29.45 ? 10 DA A N1 1 ATOM 200 C C2 . DA A 1 10 ? 4.594 -14.624 -8.647 1.00 32.58 ? 10 DA A C2 1 ATOM 201 N N3 . DA A 1 10 ? 4.807 -15.756 -9.314 1.00 33.33 ? 10 DA A N3 1 ATOM 202 C C4 . DA A 1 10 ? 3.759 -16.580 -9.189 1.00 32.52 ? 10 DA A C4 1 HETATM 203 RU RU . RKL B 2 . ? -6.315 -22.134 -11.975 1.00 23.96 ? 101 RKL A RU 1 HETATM 204 C C1 . RKL B 2 . ? -5.108 -20.116 -13.569 1.00 23.75 ? 101 RKL A C1 1 HETATM 205 N N1 . RKL B 2 . ? -7.075 -20.225 -12.247 1.00 24.13 ? 101 RKL A N1 1 HETATM 206 C C2 . RKL B 2 . ? -3.656 -21.955 -13.541 1.00 25.79 ? 101 RKL A C2 1 HETATM 207 N N2 . RKL B 2 . ? -4.844 -21.456 -13.232 1.00 25.09 ? 101 RKL A N2 1 HETATM 208 C C3 . RKL B 2 . ? -2.782 -21.284 -14.412 1.00 28.04 ? 101 RKL A C3 1 HETATM 209 N N3 . RKL B 2 . ? -3.667 -17.472 -15.611 1.00 28.51 ? 101 RKL A N3 1 HETATM 210 C C4 . RKL B 2 . ? -3.065 -19.992 -14.785 1.00 24.93 ? 101 RKL A C4 1 HETATM 211 N N4 . RKL B 2 . ? -6.145 -16.275 -14.836 1.00 28.90 ? 101 RKL A N4 1 HETATM 212 C C5 . RKL B 2 . ? -4.231 -19.400 -14.401 1.00 23.59 ? 101 RKL A C5 1 HETATM 213 N N5 . RKL B 2 . ? -5.332 -21.508 -10.306 1.00 25.02 ? 101 RKL A N5 1 HETATM 214 C C6 . RKL B 2 . ? -4.581 -18.089 -14.836 1.00 23.77 ? 101 RKL A C6 1 HETATM 215 N N6 . RKL B 2 . ? -4.448 -20.955 -7.696 1.00 25.91 ? 101 RKL A N6 1 HETATM 216 C C7 . RKL B 2 . ? -5.790 -17.531 -14.387 1.00 26.91 ? 101 RKL A C7 1 HETATM 217 N N7 . RKL B 2 . ? -9.424 -23.108 -8.459 1.00 25.43 ? 101 RKL A N7 1 HETATM 218 C C8 . RKL B 2 . ? -6.646 -18.246 -13.551 1.00 24.14 ? 101 RKL A C8 1 HETATM 219 N N8 . RKL B 2 . ? -7.723 -22.693 -10.723 1.00 24.06 ? 101 RKL A N8 1 HETATM 220 C C9 . RKL B 2 . ? -7.828 -17.770 -13.088 1.00 24.90 ? 101 RKL A C9 1 HETATM 221 N N9 . RKL B 2 . ? -7.306 -22.837 -13.582 1.00 21.69 ? 101 RKL A N9 1 HETATM 222 C C10 . RKL B 2 . ? -6.324 -19.566 -13.152 1.00 23.60 ? 101 RKL A C10 1 HETATM 223 N N10 . RKL B 2 . ? -8.564 -24.423 -15.598 1.00 21.05 ? 101 RKL A N10 1 HETATM 224 C C11 . RKL B 2 . ? -8.634 -18.497 -12.241 1.00 24.65 ? 101 RKL A C11 1 HETATM 225 N N11 . RKL B 2 . ? -4.972 -26.810 -12.256 1.00 22.29 ? 101 RKL A N11 1 HETATM 226 C C12 . RKL B 2 . ? -8.282 -19.796 -11.850 1.00 24.02 ? 101 RKL A C12 1 HETATM 227 N N12 . RKL B 2 . ? -5.543 -24.103 -11.807 1.00 22.80 ? 101 RKL A N12 1 HETATM 228 C C13 . RKL B 2 . ? -5.196 -15.668 -15.619 1.00 28.40 ? 101 RKL A C13 1 HETATM 229 C C14 . RKL B 2 . ? -5.517 -14.404 -16.096 1.00 32.93 ? 101 RKL A C14 1 HETATM 230 C C15 . RKL B 2 . ? -4.000 -16.250 -16.033 1.00 27.72 ? 101 RKL A C15 1 HETATM 231 C C16 . RKL B 2 . ? -3.093 -15.614 -16.886 1.00 31.21 ? 101 RKL A C16 1 HETATM 232 C C17 . RKL B 2 . ? -3.408 -14.342 -17.329 1.00 33.02 ? 101 RKL A C17 1 HETATM 233 C C18 . RKL B 2 . ? -4.607 -13.771 -16.942 1.00 33.51 ? 101 RKL A C18 1 HETATM 234 C C19 . RKL B 2 . ? -6.104 -21.777 -9.219 1.00 24.40 ? 101 RKL A C19 1 HETATM 235 C C20 . RKL B 2 . ? -4.087 -21.040 -10.093 1.00 29.60 ? 101 RKL A C20 1 HETATM 236 C C21 . RKL B 2 . ? -3.671 -20.717 -8.769 1.00 27.63 ? 101 RKL A C21 1 HETATM 237 C C22 . RKL B 2 . ? -5.669 -21.455 -7.875 1.00 25.96 ? 101 RKL A C22 1 HETATM 238 C C23 . RKL B 2 . ? -6.518 -21.690 -6.793 1.00 25.37 ? 101 RKL A C23 1 HETATM 239 C C24 . RKL B 2 . ? -7.747 -22.211 -6.992 1.00 26.69 ? 101 RKL A C24 1 HETATM 240 C C25 . RKL B 2 . ? -8.197 -22.572 -8.289 1.00 26.97 ? 101 RKL A C25 1 HETATM 241 C C26 . RKL B 2 . ? -7.354 -22.330 -9.402 1.00 23.34 ? 101 RKL A C26 1 HETATM 242 C C27 . RKL B 2 . ? -9.835 -23.434 -9.664 1.00 23.60 ? 101 RKL A C27 1 HETATM 243 C C28 . RKL B 2 . ? -8.978 -23.161 -10.791 1.00 22.70 ? 101 RKL A C28 1 HETATM 244 C C29 . RKL B 2 . ? -7.068 -24.188 -13.704 1.00 21.74 ? 101 RKL A C29 1 HETATM 245 C C30 . RKL B 2 . ? -8.247 -22.379 -14.447 1.00 23.50 ? 101 RKL A C30 1 HETATM 246 C C31 . RKL B 2 . ? -8.843 -23.166 -15.415 1.00 22.14 ? 101 RKL A C31 1 HETATM 247 C C32 . RKL B 2 . ? -7.703 -24.972 -14.730 1.00 22.15 ? 101 RKL A C32 1 HETATM 248 C C33 . RKL B 2 . ? -7.395 -26.320 -14.896 1.00 21.77 ? 101 RKL A C33 1 HETATM 249 C C34 . RKL B 2 . ? -6.499 -26.943 -14.040 1.00 20.31 ? 101 RKL A C34 1 HETATM 250 C C35 . RKL B 2 . ? -5.878 -26.208 -13.021 1.00 19.98 ? 101 RKL A C35 1 HETATM 251 C C36 . RKL B 2 . ? -6.145 -24.830 -12.829 1.00 21.64 ? 101 RKL A C36 1 HETATM 252 C C37 . RKL B 2 . ? -4.405 -26.132 -11.284 1.00 24.33 ? 101 RKL A C37 1 HETATM 253 C C38 . RKL B 2 . ? -4.667 -24.772 -11.036 1.00 24.45 ? 101 RKL A C38 1 HETATM 254 BA BA . BA C 3 . ? -14.576 -11.322 4.142 1.00 24.85 ? 102 BA A BA 1 HETATM 255 O O . HOH D 4 . ? -16.342 -12.583 6.061 1.00 28.60 ? 201 HOH A O 1 HETATM 256 O O . HOH D 4 . ? -5.341 -22.606 -16.398 1.00 26.23 ? 202 HOH A O 1 HETATM 257 O O . HOH D 4 . ? -17.113 -11.999 2.780 1.00 25.71 ? 203 HOH A O 1 HETATM 258 O O . HOH D 4 . ? -14.085 -11.513 -1.300 1.00 28.32 ? 204 HOH A O 1 HETATM 259 O O . HOH D 4 . ? -7.014 -25.525 -8.941 1.00 25.48 ? 205 HOH A O 1 HETATM 260 O O . HOH D 4 . ? -19.109 -3.743 4.394 1.00 38.31 ? 206 HOH A O 1 HETATM 261 O O . HOH D 4 . ? -14.135 -12.686 1.717 1.00 35.21 ? 207 HOH A O 1 HETATM 262 O O . HOH D 4 . ? -3.036 -8.938 -11.405 1.00 51.26 ? 208 HOH A O 1 HETATM 263 O O . HOH D 4 . ? -1.823 -18.849 -10.506 1.00 31.93 ? 209 HOH A O 1 HETATM 264 O O . HOH D 4 . ? -0.106 -12.251 -15.399 1.00 54.44 ? 210 HOH A O 1 HETATM 265 O O . HOH D 4 . ? -4.300 -11.037 -14.285 1.00 48.17 ? 211 HOH A O 1 HETATM 266 O O . HOH D 4 . ? -4.661 -24.672 -7.752 1.00 34.58 ? 212 HOH A O 1 HETATM 267 O O . HOH D 4 . ? -11.406 -23.081 -12.762 1.00 37.58 ? 213 HOH A O 1 HETATM 268 O O . HOH D 4 . ? -12.797 -11.387 10.857 1.00 50.58 ? 214 HOH A O 1 HETATM 269 O O . HOH D 4 . ? -6.693 -11.677 -13.179 1.00 47.09 ? 215 HOH A O 1 HETATM 270 O O . HOH D 4 . ? -11.728 -9.720 -5.721 1.00 35.05 ? 216 HOH A O 1 HETATM 271 O O . HOH D 4 . ? -3.174 -8.657 1.550 1.00 44.15 ? 217 HOH A O 1 HETATM 272 O O . HOH D 4 . ? -10.024 -10.621 -8.175 1.00 44.52 ? 218 HOH A O 1 HETATM 273 O O . HOH D 4 . ? -13.354 -13.780 5.038 1.00 40.26 ? 219 HOH A O 1 HETATM 274 O O . HOH D 4 . ? -13.772 -10.574 6.677 1.00 26.76 ? 220 HOH A O 1 HETATM 275 O O . HOH D 4 . ? -11.797 -11.517 3.464 1.00 29.04 ? 221 HOH A O 1 HETATM 276 O O . HOH D 4 . ? -0.148 -20.434 -11.927 1.00 45.32 ? 222 HOH A O 1 HETATM 277 O O . HOH D 4 . ? -16.004 -13.934 8.626 1.00 46.77 ? 223 HOH A O 1 HETATM 278 O O . HOH D 4 . ? -8.098 -10.522 -10.434 1.00 46.24 ? 224 HOH A O 1 HETATM 279 O O . HOH D 4 . ? -9.556 -7.505 -8.988 1.00 56.07 ? 225 HOH A O 1 HETATM 280 O O . HOH D 4 . ? -3.967 -23.783 -5.179 0.50 25.18 ? 226 HOH A O 1 HETATM 281 O O . HOH D 4 . ? -22.699 -5.704 3.350 1.00 45.90 ? 227 HOH A O 1 HETATM 282 O O . HOH D 4 . ? -5.361 -8.074 -9.990 1.00 51.06 ? 228 HOH A O 1 HETATM 283 O O . HOH D 4 . ? 4.194 -22.032 -16.575 1.00 54.26 ? 229 HOH A O 1 HETATM 284 O O . HOH D 4 . ? -8.844 -1.605 -9.897 1.00 53.27 ? 230 HOH A O 1 HETATM 285 O O . HOH D 4 . ? -16.864 -12.034 -1.102 1.00 60.88 ? 231 HOH A O 1 HETATM 286 O O . HOH D 4 . ? -3.170 -10.747 -18.797 1.00 57.11 ? 232 HOH A O 1 HETATM 287 O O . HOH D 4 . ? 7.846 -16.359 -10.915 1.00 62.20 ? 233 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RKL 1 101 11 RKL RKL A . C 3 BA 1 102 12 BA BA A . D 4 HOH 1 201 1 HOH HOH A . D 4 HOH 2 202 2 HOH HOH A . D 4 HOH 3 203 3 HOH HOH A . D 4 HOH 4 204 4 HOH HOH A . D 4 HOH 5 205 5 HOH HOH A . D 4 HOH 6 206 6 HOH HOH A . D 4 HOH 7 207 7 HOH HOH A . D 4 HOH 8 208 8 HOH HOH A . D 4 HOH 9 209 9 HOH HOH A . D 4 HOH 10 210 10 HOH HOH A . D 4 HOH 11 211 11 HOH HOH A . D 4 HOH 12 212 13 HOH HOH A . D 4 HOH 13 213 14 HOH HOH A . D 4 HOH 14 214 16 HOH HOH A . D 4 HOH 15 215 17 HOH HOH A . D 4 HOH 16 216 18 HOH HOH A . D 4 HOH 17 217 24 HOH HOH A . D 4 HOH 18 218 25 HOH HOH A . D 4 HOH 19 219 26 HOH HOH A . D 4 HOH 20 220 27 HOH HOH A . D 4 HOH 21 221 28 HOH HOH A . D 4 HOH 22 222 29 HOH HOH A . D 4 HOH 23 223 30 HOH HOH A . D 4 HOH 24 224 31 HOH HOH A . D 4 HOH 25 225 35 HOH HOH A . D 4 HOH 26 226 37 HOH HOH A . D 4 HOH 27 227 44 HOH HOH A . D 4 HOH 28 228 45 HOH HOH A . D 4 HOH 29 229 47 HOH HOH A . D 4 HOH 30 230 48 HOH HOH A . D 4 HOH 31 231 49 HOH HOH A . D 4 HOH 32 232 50 HOH HOH A . D 4 HOH 33 233 51 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1940 ? 1 MORE -26 ? 1 'SSA (A^2)' 4530 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 201 ? 1_555 136.0 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 203 ? 1_555 125.9 ? 3 O ? D HOH . ? A HOH 201 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 203 ? 1_555 71.5 ? 4 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 207 ? 1_555 106.8 ? 5 O ? D HOH . ? A HOH 201 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 207 ? 1_555 117.1 ? 6 O ? D HOH . ? A HOH 203 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 207 ? 1_555 68.1 ? 7 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 219 ? 1_555 123.8 ? 8 O ? D HOH . ? A HOH 201 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 219 ? 1_555 71.5 ? 9 O ? D HOH . ? A HOH 203 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 219 ? 1_555 108.1 ? 10 O ? D HOH . ? A HOH 207 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 219 ? 1_555 77.8 ? 11 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 220 ? 1_555 71.5 ? 12 O ? D HOH . ? A HOH 201 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 220 ? 1_555 71.8 ? 13 O ? D HOH . ? A HOH 203 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 220 ? 1_555 137.2 ? 14 O ? D HOH . ? A HOH 207 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 220 ? 1_555 151.1 ? 15 O ? D HOH . ? A HOH 219 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 220 ? 1_555 79.8 ? 16 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 64.6 ? 17 O ? D HOH . ? A HOH 201 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 135.9 ? 18 O ? D HOH . ? A HOH 203 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 135.0 ? 19 O ? D HOH . ? A HOH 207 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 67.2 ? 20 O ? D HOH . ? A HOH 219 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 66.8 ? 21 O ? D HOH . ? A HOH 220 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 87.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-24 2 'Structure model' 1 1 2014-12-03 3 'Structure model' 1 2 2015-01-07 4 'Structure model' 1 3 2018-04-18 5 'Structure model' 1 4 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_detector 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_detector.detector' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.value' 17 5 'Structure model' '_struct_conn.pdbx_dist_value' 18 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 100.14 105.70 -5.56 0.90 N 2 1 "O5'" A DA 10 ? ? P A DA 10 ? ? OP1 A DA 10 ? ? 94.99 105.70 -10.71 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 RKL RU RU N N 148 RKL C1 C Y N 149 RKL N1 N Y N 150 RKL C2 C Y N 151 RKL N2 N Y N 152 RKL C3 C Y N 153 RKL N3 N Y N 154 RKL C4 C Y N 155 RKL N4 N Y N 156 RKL C5 C Y N 157 RKL N5 N Y N 158 RKL C6 C Y N 159 RKL N6 N Y N 160 RKL C7 C Y N 161 RKL N7 N Y N 162 RKL C8 C Y N 163 RKL N8 N Y N 164 RKL C9 C Y N 165 RKL N9 N Y N 166 RKL C10 C Y N 167 RKL N10 N Y N 168 RKL C11 C Y N 169 RKL N11 N Y N 170 RKL C12 C Y N 171 RKL N12 N Y N 172 RKL C13 C Y N 173 RKL C14 C Y N 174 RKL C15 C Y N 175 RKL C16 C Y N 176 RKL C17 C Y N 177 RKL C18 C Y N 178 RKL C19 C Y N 179 RKL C20 C Y N 180 RKL C21 C Y N 181 RKL C22 C Y N 182 RKL C23 C Y N 183 RKL C24 C Y N 184 RKL C25 C Y N 185 RKL C26 C Y N 186 RKL C27 C Y N 187 RKL C28 C Y N 188 RKL C29 C Y N 189 RKL C30 C Y N 190 RKL C31 C Y N 191 RKL C32 C Y N 192 RKL C33 C Y N 193 RKL C34 C Y N 194 RKL C35 C Y N 195 RKL C36 C Y N 196 RKL C37 C Y N 197 RKL C38 C Y N 198 RKL H2 H N N 199 RKL H3 H N N 200 RKL H4 H N N 201 RKL H9 H N N 202 RKL H11 H N N 203 RKL H12 H N N 204 RKL H14 H N N 205 RKL H16 H N N 206 RKL H17 H N N 207 RKL H18 H N N 208 RKL H20 H N N 209 RKL H21 H N N 210 RKL H23 H N N 211 RKL H24 H N N 212 RKL H27 H N N 213 RKL H28 H N N 214 RKL H30 H N N 215 RKL H31 H N N 216 RKL H33 H N N 217 RKL H34 H N N 218 RKL H37 H N N 219 RKL H38 H N N 220 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 RKL RU N1 sing N N 152 RKL RU N2 sing N N 153 RKL RU N5 sing N N 154 RKL RU N8 sing N N 155 RKL RU N9 sing N N 156 RKL RU N12 sing N N 157 RKL C1 N2 doub Y N 158 RKL C1 C5 sing Y N 159 RKL C1 C10 sing Y N 160 RKL N1 C10 doub Y N 161 RKL N1 C12 sing Y N 162 RKL C2 N2 sing Y N 163 RKL C2 C3 doub Y N 164 RKL C2 H2 sing N N 165 RKL C3 C4 sing Y N 166 RKL C3 H3 sing N N 167 RKL N3 C6 doub Y N 168 RKL N3 C15 sing Y N 169 RKL C4 C5 doub Y N 170 RKL C4 H4 sing N N 171 RKL N4 C7 doub Y N 172 RKL N4 C13 sing Y N 173 RKL C5 C6 sing Y N 174 RKL N5 C19 doub Y N 175 RKL N5 C20 sing Y N 176 RKL C6 C7 sing Y N 177 RKL N6 C21 sing Y N 178 RKL N6 C22 doub Y N 179 RKL C7 C8 sing Y N 180 RKL N7 C25 doub Y N 181 RKL N7 C27 sing Y N 182 RKL C8 C9 doub Y N 183 RKL C8 C10 sing Y N 184 RKL N8 C26 doub Y N 185 RKL N8 C28 sing Y N 186 RKL C9 C11 sing Y N 187 RKL C9 H9 sing N N 188 RKL N9 C29 doub Y N 189 RKL N9 C30 sing Y N 190 RKL N10 C31 sing Y N 191 RKL N10 C32 doub Y N 192 RKL C11 C12 doub Y N 193 RKL C11 H11 sing N N 194 RKL N11 C35 doub Y N 195 RKL N11 C37 sing Y N 196 RKL C12 H12 sing N N 197 RKL N12 C36 doub Y N 198 RKL N12 C38 sing Y N 199 RKL C13 C14 sing Y N 200 RKL C13 C15 doub Y N 201 RKL C14 C18 doub Y N 202 RKL C14 H14 sing N N 203 RKL C15 C16 sing Y N 204 RKL C16 C17 doub Y N 205 RKL C16 H16 sing N N 206 RKL C17 C18 sing Y N 207 RKL C17 H17 sing N N 208 RKL C18 H18 sing N N 209 RKL C19 C22 sing Y N 210 RKL C19 C26 sing Y N 211 RKL C20 C21 doub Y N 212 RKL C20 H20 sing N N 213 RKL C21 H21 sing N N 214 RKL C22 C23 sing Y N 215 RKL C23 C24 doub Y N 216 RKL C23 H23 sing N N 217 RKL C24 C25 sing Y N 218 RKL C24 H24 sing N N 219 RKL C25 C26 sing Y N 220 RKL C27 C28 doub Y N 221 RKL C27 H27 sing N N 222 RKL C28 H28 sing N N 223 RKL C29 C32 sing Y N 224 RKL C29 C36 sing Y N 225 RKL C30 C31 doub Y N 226 RKL C30 H30 sing N N 227 RKL C31 H31 sing N N 228 RKL C32 C33 sing Y N 229 RKL C33 C34 doub Y N 230 RKL C33 H33 sing N N 231 RKL C34 C35 sing Y N 232 RKL C34 H34 sing N N 233 RKL C35 C36 sing Y N 234 RKL C37 C38 doub Y N 235 RKL C37 H37 sing N N 236 RKL C38 H38 sing N N 237 # _ndb_struct_conf_na.entry_id 4LTH _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 A DG 9 7_555 0.106 -0.091 0.183 -11.811 6.485 0.829 1 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DG 3 1_555 A DC 8 7_555 -0.212 -0.045 0.141 22.245 -5.406 -0.611 2 A_DG3:DC8_A A 3 ? A 8 ? 19 1 1 A DG 4 1_555 A DC 7 7_555 -0.238 -0.138 -0.120 -8.420 2.431 -1.061 3 A_DG4:DC7_A A 4 ? A 7 ? 19 1 1 A DC 5 1_555 A DG 6 7_555 0.120 -0.126 0.203 -2.142 -9.774 -1.179 4 A_DC5:DG6_A A 5 ? A 6 ? 19 1 1 A DG 6 1_555 A DC 5 7_555 -0.120 -0.126 0.203 2.142 -9.774 -1.179 5 A_DG6:DC5_A A 6 ? A 5 ? 19 1 1 A DC 7 1_555 A DG 4 7_555 0.238 -0.138 -0.120 8.420 2.431 -1.062 6 A_DC7:DG4_A A 7 ? A 4 ? 19 1 1 A DC 8 1_555 A DG 3 7_555 0.212 -0.045 0.141 -22.245 -5.406 -0.611 7 A_DC8:DG3_A A 8 ? A 3 ? 19 1 1 A DG 9 1_555 A DC 2 7_555 -0.106 -0.091 0.183 11.811 6.485 0.829 8 A_DG9:DC2_A A 9 ? A 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 A DG 9 7_555 A DG 3 1_555 A DC 8 7_555 -0.475 1.733 2.698 1.258 3.477 19.384 3.612 1.909 2.924 10.207 -3.693 19.731 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DG 3 1_555 A DC 8 7_555 A DG 4 1_555 A DC 7 7_555 -0.083 0.854 5.153 -2.322 49.972 14.936 -5.315 -0.197 2.345 74.354 3.455 52.070 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DG 4 1_555 A DC 7 7_555 A DC 5 1_555 A DG 6 7_555 -0.895 0.201 3.229 -3.936 -1.160 38.017 0.453 0.872 3.295 -1.774 6.021 38.230 3 AA_DG4DC5:DG6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DC 5 1_555 A DG 6 7_555 A DG 6 1_555 A DC 5 7_555 0.000 0.914 3.557 0.000 21.032 27.105 -2.413 0.000 3.387 38.383 0.000 34.187 4 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DG 6 1_555 A DC 5 7_555 A DC 7 1_555 A DG 4 7_555 0.895 0.201 3.229 3.936 -1.160 38.017 0.453 -0.872 3.295 -1.774 -6.021 38.230 5 AA_DG6DC7:DG4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DC 7 1_555 A DG 4 7_555 A DC 8 1_555 A DG 3 7_555 0.083 0.854 5.153 2.322 49.972 14.936 -5.315 0.197 2.345 74.354 -3.455 52.070 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DC 8 1_555 A DG 3 7_555 A DG 9 1_555 A DC 2 7_555 0.475 1.733 2.698 -1.258 3.477 19.384 3.612 -1.909 2.924 10.207 3.693 19.731 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'Ru(tap)2(dppz) complex' RKL 3 'BARIUM ION' BA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3QRN _pdbx_initial_refinement_model.details 'PDB ENTRY 3QRN' #