Structure based on 3u6d

Ideal structure
Name: 5'-o-{(s)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}thymidine
Formula: C12 H20 N3 O7 P S
Weight: 381.342
SMILES: "CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)NCCS)O2)C(=O)NC1=O"
Spacial conformation based on PDB 3u6d.
Also present in other 5 PDB entries.
RESIDUE   08Q     44
CONECT      P      4 OP1  O5'  N4   OP3 
CONECT      OP1    1 P   
CONECT      C8'    4 C7'  S    H1   H2  
CONECT      C7'    4 C8'  N4   H3   H4  
CONECT      C5'    4 O5'  C4'  H5   H6  
CONECT      O5'    2 P    C5' 
CONECT      C4'    4 C5'  O4'  C3'  H7  
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H8  
CONECT      O3'    2 C3'  H9  
CONECT      C2'    4 C3'  C1'  H10  H11 
CONECT      C1'    4 O4'  C2'  N1   H12 
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   H13 
CONECT      C4     3 N3   O4   C5  
CONECT      N4     3 P    C7'  H14 
CONECT      O4     1 C4  
CONECT      C5     3 C4   C7   C6  
CONECT      C7     4 C5   H15  H16  H17 
CONECT      C6     3 N1   C5   H18 
CONECT      S      2 C8'  H19 
CONECT      OP3    2 P    HOP3
CONECT      H1     1 C8' 
CONECT      H2     1 C8' 
CONECT      H3     1 C7' 
CONECT      H4     1 C7' 
CONECT      H5     1 C5' 
CONECT      H6     1 C5' 
CONECT      H7     1 C4' 
CONECT      H8     1 C3' 
CONECT      H9     1 O3' 
CONECT      H10    1 C2' 
CONECT      H11    1 C2' 
CONECT      H12    1 C1' 
CONECT      H13    1 N3  
CONECT      H14    1 N4  
CONECT      H15    1 C7  
CONECT      H16    1 C7  
CONECT      H17    1 C7  
CONECT      H18    1 C6  
CONECT      H19    1 S   
CONECT      HOP3   1 OP3 
END   
HET    08Q             44
HETNAM     08Q 5'-O-{(S)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}thy
HETNAM   2 08Q midine
FORMUL      08Q    C12 H20 N3 O7 P1 S1

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science