Structure based on 3rm6

Ideal structure
Name: 2-{[(2-aminopyrimidin-5-yl)methyl]amino}-5-nitro-4-{[2-(piperazin-1-yl)ethyl]amino}benzamide
Formula: C18 H25 N9 O3
Weight: 415.450
SMILES: "NC(=O)c1cc(c(NCCN2CCNCC2)cc1NCc3cnc(N)nc3)[N+]([O-])=O"
Spacial conformation based on PDB 3rm6
RESIDUE   18Z     55
CONECT      N01    3 C16  HN01 HN0A
CONECT      N02    3 C14  C22  HN02
CONECT      N03    3 C12  C17  HN03
CONECT      N04    2 C19  C20 
CONECT      N05    2 C20  C21 
CONECT      N06    3 C20  HN06 HN0B
CONECT      N07    3 C23  C24  C27 
CONECT      N08    3 C25  C26  HN08
CONECT      N09    3 C15  O29  O30 
CONECT      C10    3 C11  C15  H10 
CONECT      C11    3 C10  C12  C16 
CONECT      C12    3 N03  C11  C13 
CONECT      C13    3 C12  C14  H13 
CONECT      C14    3 N02  C13  C15 
CONECT      C15    3 N09  C10  C14 
CONECT      C16    3 N01  C11  O28 
CONECT      C17    4 N03  C18  H17  H17A
CONECT      C18    3 C17  C19  C21 
CONECT      C19    3 N04  C18  H19 
CONECT      C20    3 N04  N05  N06 
CONECT      C21    3 N05  C18  H21 
CONECT      C22    4 N02  C23  H22  H22A
CONECT      C23    4 N07  C22  H23  H23A
CONECT      C24    4 N07  C25  H24  H24A
CONECT      C25    4 N08  C24  H25  H25A
CONECT      C26    4 N08  C27  H26  H26A
CONECT      C27    4 N07  C26  H27  H27A
CONECT      O28    1 C16 
CONECT      O29    1 N09 
CONECT      O30    1 N09 
CONECT      HN01   1 N01 
CONECT      HN0A   1 N01 
CONECT      HN02   1 N02 
CONECT      HN03   1 N03 
CONECT      HN06   1 N06 
CONECT      HN0B   1 N06 
CONECT      HN08   1 N08 
CONECT      H10    1 C10 
CONECT      H13    1 C13 
CONECT      H17    1 C17 
CONECT      H17A   1 C17 
CONECT      H19    1 C19 
CONECT      H21    1 C21 
CONECT      H22    1 C22 
CONECT      H22A   1 C22 
CONECT      H23    1 C23 
CONECT      H23A   1 C23 
CONECT      H24    1 C24 
CONECT      H24A   1 C24 
CONECT      H25    1 C25 
CONECT      H25A   1 C25 
CONECT      H26    1 C26 
CONECT      H26A   1 C26 
CONECT      H27    1 C27 
CONECT      H27A   1 C27 
END   
HET    18Z             55
HETNAM     18Z 2-{[(2-aminopyrimidin-5-yl)methyl]amino}-5-nitro-4-{[2-
HETNAM   2 18Z (piperazin-1-yl)ethyl]amino}benzamide
FORMUL      18Z    C18 H25 N9 O3

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science