Structure based on 4ksy | Ideal structure |
|
Name: cgamp |
Formula: C20 H24 N10 O13 P2 |
Weight: 674.411 |
SMILES: "NC1=NC(=O)c2ncn([CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]3[CH]4O)n6cnc7c(N)ncnc67)c2N1" |
Spacial conformation based on PDB
4ksy. Also present in other
24 PDB entries. |
RESIDUE 1SY 69
CONECT C2 3 N1 N3 H1
CONECT N01 3 C6 H2 H3
CONECT C6 3 N01 N1 C5
CONECT N1 2 C2 C6
CONECT N3 2 C2 C4
CONECT C4 3 N3 C5 N9
CONECT C5 3 C6 C4 N7
CONECT N7 2 C5 C8
CONECT C8 3 N7 N9 H4
CONECT N9 3 C4 C8 C1'
CONECT C1' 4 N9 C2' O4' H5
CONECT C2' 4 C1' O2' C3' H6
CONECT O2' 2 C2' H7
CONECT C3' 4 C2' C4' O28 H8
CONECT C4' 4 C3' C16 O4' H9
CONECT C16 4 C4' O17 H10 H11
CONECT O17 2 C16 P18
CONECT P18 4 O17 O19 O20 O44
CONECT O19 2 P18 H12
CONECT O20 2 P18 C21
CONECT C21 4 O20 C22 C32 H13
CONECT C22 4 C21 O23 C24 H14
CONECT O23 2 C22 H15
CONECT C24 4 C22 C25 O31 H16
CONECT C25 4 C24 O26 H17 H18
CONECT O26 2 C25 P27
CONECT P27 4 O26 O28 O29 O30
CONECT O28 2 C3' P27
CONECT O29 1 P27
CONECT O30 2 P27 H19
CONECT O31 2 C24 C32
CONECT C32 4 C21 O31 N33 H20
CONECT N33 3 C32 C34 C36
CONECT C34 3 N33 N35 H21
CONECT N35 2 C34 C37
CONECT C36 3 N33 C37 N42
CONECT C37 3 N35 C36 C38
CONECT C38 3 C37 N39 O43
CONECT N39 2 C38 C40
CONECT C40 3 N39 N41 N42
CONECT N41 3 C40 H22 H23
CONECT N42 3 C36 C40 H24
CONECT O43 1 C38
CONECT O44 1 P18
CONECT O4' 2 C1' C4'
CONECT H1 1 C2
CONECT H2 1 N01
CONECT H3 1 N01
CONECT H4 1 C8
CONECT H5 1 C1'
CONECT H6 1 C2'
CONECT H7 1 O2'
CONECT H8 1 C3'
CONECT H9 1 C4'
CONECT H10 1 C16
CONECT H11 1 C16
CONECT H12 1 O19
CONECT H13 1 C21
CONECT H14 1 C22
CONECT H15 1 O23
CONECT H16 1 C24
CONECT H17 1 C25
CONECT H18 1 C25
CONECT H19 1 O30
CONECT H20 1 C32
CONECT H21 1 C34
CONECT H22 1 N41
CONECT H23 1 N41
CONECT H24 1 N42
END
HET 1SY 69
HETSYN 1SY 2',3' cGAMP; c-GMP-AMP; c[G(2',5')pA(3',5')p]
HETNAM 1SY cGAMP
FORMUL 1SY C20 H24 N10 O13 P2