MONOMER pageuses Jmol, developed by the Jmol Development Team (color reference)
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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014 Bioinformatics Unit Weizmann Institute of Science |
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| Name: 5'-o-[(s)-hydroxy{[(s)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine | ||
| Formula: C10 H18 N3 O13 P3 | ||
| Weight: 481.184 | ||
| SMILES: "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O" | ||
| Spacial conformation based on PDB
4oio. Also present in other 16 PDB entries. |
RESIDUE 2TM 47
CONECT O5' 2 C5' PA
CONECT C5' 4 O5' C4' H1 H2
CONECT C4' 4 C5' O4' C3' H3
CONECT O4' 2 C4' C1'
CONECT C3' 4 C4' O3' C2' H4
CONECT O3' 2 C3' H5
CONECT C2' 4 C3' O2' C1' H6
CONECT O2' 2 C2' H7
CONECT C1' 4 O4' C2' N1 H8
CONECT C5 3 C6 C4 H9
CONECT C6 3 C5 N1 H10
CONECT N1 3 C1' C6 C2
CONECT C2 3 N1 N3 O2
CONECT N3 2 C2 C4
CONECT C4 3 C5 N3 N4
CONECT O3G 2 PG H11
CONECT PG 4 O3G O1G O2G O3B
CONECT O1G 1 PG
CONECT O2G 2 PG H12
CONECT O3B 2 PG PB
CONECT PB 4 O3B O1B O2B C1
CONECT O1B 2 PB H13
CONECT O2B 1 PB
CONECT PA 4 O5' O1A O2A C1
CONECT O1A 1 PA
CONECT O2A 2 PA H14
CONECT N4 3 C4 H15 H16
CONECT O2 1 C2
CONECT C1 4 PB PA H17 H18
CONECT H1 1 C5'
CONECT H2 1 C5'
CONECT H3 1 C4'
CONECT H4 1 C3'
CONECT H5 1 O3'
CONECT H6 1 C2'
CONECT H7 1 O2'
CONECT H8 1 C1'
CONECT H9 1 C5
CONECT H10 1 C6
CONECT H11 1 O3G
CONECT H12 1 O2G
CONECT H13 1 O1B
CONECT H14 1 O2A
CONECT H15 1 N4
CONECT H16 1 N4
CONECT H17 1 C1
CONECT H18 1 C1
END
HET 2TM 47
HETSYN 2TM CMPcPP
HETNAM 2TM 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]
HETNAM 2 2TM methyl}phosphoryl]cytidine
FORMUL 2TM C10 H18 N3 O13 P3
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This OCA
MONOMER page uses Jmol, developed by the Jmol Development Team (color reference)
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