Structure based on 4mgt

Ideal structure
Name: 2'-deoxy-n-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate)
Formula: C11 H18 N3 O7 P S
Weight: 367.315
SMILES: "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=NC2=O)NCCS"
Spacial conformation based on PDB 4mgt.
Also present in other 25 PDB entries.
RESIDUE   2YR     41
CONECT      P      4 OP1  OP2  O5'  OP3 
CONECT      OP1    1 P   
CONECT      OP2    2 P    H2  
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H3   H4  
CONECT      C4'    4 C5'  O4'  C3'  H5  
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H6  
CONECT      O3'    2 C3'  H7  
CONECT      C2'    4 C3'  C1'  H8   H9  
CONECT      C1'    4 O4'  C2'  N1   H10 
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   N4   C5  
CONECT      N4     3 C4   C9   H11 
CONECT      C5     3 C4   C6   H12 
CONECT      C6     3 N1   C5   H13 
CONECT      S      2 C8   H14 
CONECT      C8     4 S    C9   H15  H16 
CONECT      C9     4 N4   C8   H17  H18 
CONECT      H2     1 OP2 
CONECT      H3     1 C5' 
CONECT      H4     1 C5' 
CONECT      H5     1 C4' 
CONECT      H6     1 C3' 
CONECT      H7     1 O3' 
CONECT      H8     1 C2' 
CONECT      H9     1 C2' 
CONECT      H10    1 C1' 
CONECT      H11    1 N4  
CONECT      H12    1 C5  
CONECT      H13    1 C6  
CONECT      H14    1 S   
CONECT      H15    1 C8  
CONECT      H16    1 C8  
CONECT      H17    1 C9  
CONECT      H18    1 C9  
CONECT      OP3    2 P    H20 
CONECT      H20    1 OP3 
END   
HET    2YR             41
HETNAM     2YR 2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen pho
HETNAM   2 2YR sphate)
FORMUL      2YR    C11 H18 N3 O7 P1 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science