Structure based on 4s07

Ideal structure
Name: [(2r,5s)-5-(4-amino-2-oxopyrimidin-1(2h)-yl)-1,3-oxathiolan-2-yl]methyl dihydrogen phosphate
Formula: C8 H12 N3 O6 P S
Weight: 309.236
SMILES: "NC1=NC(=O)N(C=C1)[CH]2CS[CH](CO[P](O)(O)=O)O2"
Spacial conformation based on PDB 4s07.
Also present on 5tba, 5tbc
RESIDUE   42E     31
CONECT      PA     4 O1A  O2A  O5'  OP3 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   H2  
CONECT      O5'    2 PA   C5' 
CONECT      C5'    4 O5'  C4'  H3   H4  
CONECT      C4'    4 C5'  O4'  S3'  H5  
CONECT      O4'    2 C4'  C1' 
CONECT      S3'    2 C4'  C2' 
CONECT      C2'    4 S3'  C1'  H6   H7  
CONECT      C1'    4 O4'  C2'  N1   H8  
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   N4   C5  
CONECT      N4     3 C4   H9   H10 
CONECT      C5     3 C4   C6   H11 
CONECT      C6     3 N1   C5   H12 
CONECT      H2     1 O2A 
CONECT      H3     1 C5' 
CONECT      H4     1 C5' 
CONECT      H5     1 C4' 
CONECT      H6     1 C2' 
CONECT      H7     1 C2' 
CONECT      H8     1 C1' 
CONECT      H9     1 N4  
CONECT      H10    1 N4  
CONECT      H11    1 C5  
CONECT      H12    1 C6  
CONECT      OP3    2 PA   H1  
CONECT      H1     1 OP3 
HET    42E             31
HETNAM     42E [(2R,5S)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-1,3-oxathi
HETNAM   2 42E olan-2-yl]methyl dihydrogen phosphate
FORMUL      42E    C8 H12 N3 O6 P1 S1

uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science