Structure based on 5ax9

Ideal structure
Name: 4-methoxy-3-[2-[(3-methoxy-4-morpholin-4-yl-phenyl)amino]pyridin-4-yl]benzenecarbonitrile
Formula: C24 H24 N4 O3
Weight: 416.472
SMILES: "COc1ccc(cc1c2ccnc(Nc3ccc(N4CCOCC4)c(OC)c3)c2)C#N"
Spacial conformation based on PDB 5ax9
RESIDUE   4KT     55
CONECT      C14    3 C16  C15  H1  
CONECT      C16    3 C14  C17  H2  
CONECT      C17    3 C16  C19  N2  
CONECT      C22    4 C20  O3   H3   H4  
CONECT      C21    4 O3   C23  H5   H6  
CONECT      C20    4 C22  N2   H7   H8  
CONECT      C19    3 C17  C18  O2  
CONECT      C18    3 C19  C15  H9  
CONECT      C3     3 C5   C1   H10 
CONECT      C2     3 C4   C1   H11 
CONECT      C4     3 C2   C8   C6  
CONECT      C5     3 C3   C6   H12 
CONECT      C11    3 N1   C10  H13 
CONECT      C9     3 C7   N1   N3  
CONECT      C8     3 C4   C7   C10 
CONECT      C24    4 O2   H14  H15  H16 
CONECT      C6     3 C4   C5   O1  
CONECT      C1     3 C3   C2   C12 
CONECT      C7     3 C9   C8   H17 
CONECT      N1     2 C11  C9  
CONECT      C10    3 C11  C8   H18 
CONECT      C12    2 C1   N4  
CONECT      O1     2 C6   C13 
CONECT      C13    4 O1   H19  H20  H21 
CONECT      C15    3 C14  C18  N3  
CONECT      O2     2 C19  C24 
CONECT      N2     3 C17  C20  C23 
CONECT      O3     2 C22  C21 
CONECT      C23    4 C21  N2   H22  H23 
CONECT      N3     3 C9   C15  H24 
CONECT      N4     1 C12 
CONECT      H1     1 C14 
CONECT      H2     1 C16 
CONECT      H3     1 C22 
CONECT      H4     1 C22 
CONECT      H5     1 C21 
CONECT      H6     1 C21 
CONECT      H7     1 C20 
CONECT      H8     1 C20 
CONECT      H9     1 C18 
CONECT      H10    1 C3  
CONECT      H11    1 C2  
CONECT      H12    1 C5  
CONECT      H13    1 C11 
CONECT      H14    1 C24 
CONECT      H15    1 C24 
CONECT      H16    1 C24 
CONECT      H17    1 C7  
CONECT      H18    1 C10 
CONECT      H19    1 C13 
CONECT      H20    1 C13 
CONECT      H21    1 C13 
CONECT      H22    1 C23 
CONECT      H23    1 C23 
CONECT      H24    1 N3  
END   
HET    4KT             55
HETNAM     4KT 4-methoxy-3-[2-[(3-methoxy-4-morpholin-4-yl-phenyl)amin
HETNAM   2 4KT o]pyridin-4-yl]benzenecarbonitrile
FORMUL      4KT    C24 H24 N4 O3

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science