Structure based on 1p73

Ideal structure
Name: p1-(5'-adenosyl)p4-(5'-(2'-deoxy-thymidyl))tetraphosphate
Formula: C20 H25 N7 O20 P4
Weight: 807.342
SMILES: "CC1=CN([CH]2C[CH](O)[CH](CO[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)O2)C(=O)NC1=O"
Spacial conformation based on PDB 1p73.
Also present on 2orv, 2orw
RESIDUE   4TA     76
CONECT      C5M    4 C5   H5M1 H5M2 H5M3
CONECT      C5     3 C5M  C6   C4  
CONECT      C6     3 C5   N1   H6  
CONECT      N1     3 C6   C1B  C2  
CONECT      C1B    4 N1   C2B  O4'  H1B 
CONECT      C2B    4 C1B  C3B  H2'1 H2'2
CONECT      C3B    4 C2B  O3B  C4B  H3B 
CONECT      O3B    2 C3B  H1  
CONECT      C4B    4 C3B  C5B  O4'  H4B 
CONECT      C5B    4 C4B  O5'  H5'1 H5'2
CONECT      O5'    2 C5B  PD  
CONECT      PD     4 O5'  O2D  O1D  OCD 
CONECT      O2D    1 PD  
CONECT      O1D    1 PD  
CONECT      OCD    2 PD   PC  
CONECT      PC     4 OCD  O1C  O2C  OBC 
CONECT      O1C    1 PC  
CONECT      O2C    1 PC  
CONECT      OBC    2 PC   PB  
CONECT      PB     4 OBC  O2B  O1B  OAB 
CONECT      O2B    1 PB  
CONECT      O1B    1 PB  
CONECT      OAB    2 PB   PA  
CONECT      PA     4 OAB  O1A  O2A  OA  
CONECT      O1A    1 PA  
CONECT      O2A    1 PA  
CONECT      OA     2 PA   C5' 
CONECT      C5'    4 OA   C4'  H5B  H5D 
CONECT      C4'    4 C5'  O1'  C3'  H4' 
CONECT      O1'    2 C4'  C1' 
CONECT      C1'    4 O1'  C2'  N9A  H1' 
CONECT      C2'    4 C1'  O2'  C3'  H2' 
CONECT      O2'    2 C2'  H2  
CONECT      C3'    4 C4'  C2'  O3'  H3' 
CONECT      O3'    2 C3'  H3  
CONECT      N9A    3 C1'  C8A  C4A 
CONECT      C8A    3 N9A  N7A  H8A 
CONECT      N7A    2 C8A  C5A 
CONECT      C5A    3 N7A  C4A  C6A 
CONECT      C4A    3 N9A  C5A  N3A 
CONECT      N3A    2 C4A  C2A 
CONECT      C2A    3 N3A  N1A  H2A 
CONECT      N1A    2 C2A  C6A 
CONECT      C6A    3 C5A  N1A  N6A 
CONECT      N6A    3 C6A  H6A1 H6A2
CONECT      O4'    2 C1B  C4B 
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C4     3 C5   N3   O4  
CONECT      O4     1 C4  
CONECT      H5M1   1 C5M 
CONECT      H5M2   1 C5M 
CONECT      H5M3   1 C5M 
CONECT      H6     1 C6  
CONECT      H1B    1 C1B 
CONECT      H2'1   1 C2B 
CONECT      H2'2   1 C2B 
CONECT      H3B    1 C3B 
CONECT      H1     1 O3B 
CONECT      H4B    1 C4B 
CONECT      H5'1   1 C5B 
CONECT      H5'2   1 C5B 
CONECT      H5B    1 C5' 
CONECT      H5D    1 C5' 
CONECT      H4'    1 C4' 
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      H2     1 O2' 
CONECT      H3'    1 C3' 
CONECT      H3     1 O3' 
CONECT      H8A    1 C8A 
CONECT      H2A    1 C2A 
CONECT      H6A1   1 N6A 
CONECT      H6A2   1 N6A 
CONECT      HN3    1 N3  
END   
HET    4TA             76
HETNAM     4TA P1-(5'-ADENOSYL)P4-(5'-(2'-DEOXY-THYMIDYL))TETRAPHOSPHA
HETNAM   2 4TA TE
FORMUL      4TA    C20 H25 N7 O20 P4 4-

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science