Structure based on 5bom

Ideal structure
Name: 5-chloro-2'-deoxycytidine 5'-(dihydrogen phosphate)
Formula: C9 H13 Cl N3 O7 P
Weight: 341.642
SMILES: "NC1=NC(=O)N(C=C1Cl)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2"
Spacial conformation based on PDB 5bom.
Also present on 5bol, 5bpc
RESIDUE   4U3     34
CONECT      C2     3 N3   N1   O2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   C5   N4  
CONECT      C5     3 C4   C6   CL5 
CONECT      C6     3 C5   N1   H6  
CONECT      CL5    1 C5  
CONECT      P      4 OP1  OP2  O5'  OP3 
CONECT      OP1    1 P   
CONECT      OP2    2 P    HOP2
CONECT      C5'    4 O5'  C4'  H5'' H5' 
CONECT      O5'    2 P    C5' 
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H7  
CONECT      O3'    2 C3'  HO3'
CONECT      C2'    4 C3'  C1'  H2'  H2''
CONECT      C1'    4 O4'  C2'  N1   H1' 
CONECT      N1     3 C2   C6   C1' 
CONECT      O2     1 C2  
CONECT      N4     3 C4   H41  H42 
CONECT      H6     1 C6  
CONECT      HOP2   1 OP2 
CONECT      H5''   1 C5' 
CONECT      H5'    1 C5' 
CONECT      H4'    1 C4' 
CONECT      H7     1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H2'    1 C2' 
CONECT      H2''   1 C2' 
CONECT      H1'    1 C1' 
CONECT      H41    1 N4  
CONECT      H42    1 N4  
CONECT      OP3    2 P    HOP3
CONECT      HOP3   1 OP3 
HET    4U3             34
HETSYN     4U3 5-Chloro-5'-deoxycytidine
HETNAM     4U3 5-chloro-2'-deoxycytidine 5'-(dihydrogen phosphate)
FORMUL      4U3    C9 H13 Cl1 N3 O7 P1

uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science