Structure based on 5c53

Ideal structure
Name: [[(2s,5r)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
Formula: C9 H15 F N3 O12 P3
Weight: 469.148
SMILES: "NC1=NC(=O)N(C=C1F)[CH]2CC[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2"
Spacial conformation based on PDB 5c53
RESIDUE   4Y3     43
CONECT      N1     3 C2   C1'  C6  
CONECT      C2     3 N1   O2   N3  
CONECT      C4     3 C5   N3   N4  
CONECT      C5     3 C4   C6   F   
CONECT      PA     4 O5'  O1A  O2A  O3A 
CONECT      PB     4 O1B  O2B  O3A  O3B 
CONECT      PG     4 O1G  O2G  O3B  O3G 
CONECT      C5'    4 O5'  C4'  H1   H2  
CONECT      O5'    2 PA   C5' 
CONECT      C4'    4 C5'  O4'  S    H3  
CONECT      O4'    2 C4'  C1' 
CONECT      S      4 C4'  C2'  H4   H5  
CONECT      C2'    4 S    C1'  H6   H7  
CONECT      C1'    4 N1   O4'  C2'  H8  
CONECT      O1A    2 PA   H9  
CONECT      O1B    1 PB  
CONECT      O1G    2 PG   H10 
CONECT      O2     1 C2  
CONECT      O2A    1 PA  
CONECT      O2B    2 PB   H11 
CONECT      O2G    1 PG  
CONECT      N3     2 C2   C4  
CONECT      O3A    2 PA   PB  
CONECT      O3B    2 PB   PG  
CONECT      O3G    2 PG   H12 
CONECT      N4     3 C4   H13  H14 
CONECT      C6     3 N1   C5   H15 
CONECT      F      1 C5  
CONECT      H1     1 C5' 
CONECT      H2     1 C5' 
CONECT      H3     1 C4' 
CONECT      H4     1 S   
CONECT      H5     1 S   
CONECT      H6     1 C2' 
CONECT      H7     1 C2' 
CONECT      H8     1 C1' 
CONECT      H9     1 O1A 
CONECT      H10    1 O1G 
CONECT      H11    1 O2B 
CONECT      H12    1 O3G 
CONECT      H13    1 N4  
CONECT      H14    1 N4  
CONECT      H15    1 C6  
END   
HET    4Y3             43
HETNAM     4Y3 [[(2S,5R)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrim
HETNAM   2 4Y3 idin-1-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phos
HETNAM   3 4Y3 phono hydrogen phosphate
FORMUL      4Y3    C9 H15 F1 N3 O12 P3

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science