Structure based on 3lgp

Ideal structure
Name: (2r,3r)-4-[(2r)-2-(3-chlorophenyl)pyrrolidin-1-yl]-2,3-dihydroxy-4-oxo-n-[(5-{[2-(trifluoromethyl)-1h-benzimidazol-1-yl]methyl}thiophen-2-yl)methyl]butanamide
Formula: C28 H26 Cl F3 N4 O4 S
Weight: 607.044
SMILES: "O[CH]([CH](O)C(=O)N1CCC[CH]1c2cccc(Cl)c2)C(=O)NCc3sc(Cn4c5ccccc5nc4C(F)(F)F)cc3"
Spacial conformation based on PDB 3lgp
RESIDUE   50X     67
CONECT      N1     3 C2   C5   C20 
CONECT      C2     4 N1   C3   C35  H2  
CONECT      C3     4 C2   C4   H3   H3A 
CONECT      C4     4 C3   C5   H4   H4A 
CONECT      C5     4 N1   C4   H5   H5A 
CONECT      C6     3 C7   C11  N12 
CONECT      C7     3 C6   C8   N14 
CONECT      C8     3 C7   C9   H8  
CONECT      C9     3 C8   C10  H9  
CONECT      C10    3 C9   C11  H10 
CONECT      C11    3 C6   C10  H11 
CONECT      N12    3 C6   C13  C30 
CONECT      C13    3 N12  N14  C31 
CONECT      N14    2 C7   C13 
CONECT      C15    3 S16  C19  C27 
CONECT      S16    2 C15  C17 
CONECT      C17    3 S16  C18  C30 
CONECT      C18    3 C17  C19  H18 
CONECT      C19    3 C15  C18  H19 
CONECT      C20    3 N1   C21  O29 
CONECT      C21    4 C20  C22  O26  H21 
CONECT      C22    4 C21  C23  O28  H22 
CONECT      C23    3 C22  O24  N25 
CONECT      O24    1 C23 
CONECT      N25    3 C23  C27  HN25
CONECT      O26    2 C21  HO26
CONECT      C27    4 C15  N25  H27  H27A
CONECT      O28    2 C22  HO28
CONECT      O29    1 C20 
CONECT      C30    4 N12  C17  H30  H30A
CONECT      C31    4 C13  F32  F33  F34 
CONECT      F32    1 C31 
CONECT      F33    1 C31 
CONECT      F34    1 C31 
CONECT      C35    3 C2   C36  C40 
CONECT      C36    3 C35  C37  H36 
CONECT      C37    3 C36  C38  CL41
CONECT      C38    3 C37  C39  H38 
CONECT      C39    3 C38  C40  H39 
CONECT      C40    3 C35  C39  H40 
CONECT      CL41   1 C37 
CONECT      H2     1 C2  
CONECT      H3     1 C3  
CONECT      H3A    1 C3  
CONECT      H4     1 C4  
CONECT      H4A    1 C4  
CONECT      H5     1 C5  
CONECT      H5A    1 C5  
CONECT      H8     1 C8  
CONECT      H9     1 C9  
CONECT      H10    1 C10 
CONECT      H11    1 C11 
CONECT      H18    1 C18 
CONECT      H19    1 C19 
CONECT      H21    1 C21 
CONECT      H22    1 C22 
CONECT      HN25   1 N25 
CONECT      HO26   1 O26 
CONECT      H27    1 C27 
CONECT      H27A   1 C27 
CONECT      HO28   1 O28 
CONECT      H30    1 C30 
CONECT      H30A   1 C30 
CONECT      H36    1 C36 
CONECT      H38    1 C38 
CONECT      H39    1 C39 
CONECT      H40    1 C40 
END   
HET    50X             67
HETNAM     50X (2R,3R)-4-[(2R)-2-(3-chlorophenyl)pyrrolidin-1-yl]-2,3-
HETNAM   2 50X dihydroxy-4-oxo-N-[(5-{[2-(trifluoromethyl)-1H-benzimid
HETNAM   3 50X azol-1-yl]methyl}thiophen-2-yl)methyl]butanamide
FORMUL      50X    C28 H26 Cl1 F3 N4 O4 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science