Structure based on 5d0b

Ideal structure
Name: 2-amino-5-({[(1s,4s,5r)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-(5-o-phosphono-beta-d-ribofuranosyl)-3,7-dihydro-4h-pyrrolo[2,3-d]pyrimidin-4-one
Formula: C17 H24 N5 O10 P
Weight: 489.374
SMILES: "NC1=Nc2n(cc(CN[CH]3C=C[CH](O)[CH]3O)c2C(=O)N1)[CH]4O[CH](CO[P](O)(O)=O)[CH](O)[CH]4O"
Spacial conformation based on PDB 5d0b.
Also present on 7u91, 7ulc
RESIDUE   56B     57
CONECT      N9     3 C1'  C8   C4  
CONECT      C2'    4 O2'  C1'  C3'  H1  
CONECT      O2'    2 C2'  H2  
CONECT      P      4 O5'  OP2  OP1  OP3 
CONECT      C1'    4 N9   C2'  O4'  H3  
CONECT      N10    3 C9   C10  H4  
CONECT      O11    2 C11  H6  
CONECT      C8     3 N9   C7   H7  
CONECT      N3     2 C4   C2  
CONECT      O12    2 C12  H8  
CONECT      C7     3 C8   C9   C5  
CONECT      N2     3 C2   H9   H10 
CONECT      O6     1 C6  
CONECT      C9     4 N10  C7   H11  H12 
CONECT      N1     3 C2   C6   H13 
CONECT      O4'    2 C1'  C4' 
CONECT      C10    4 N10  C11  C14  H14 
CONECT      O5'    2 P    C5' 
CONECT      C11    4 O11  C10  C12  H15 
CONECT      OP2    2 P    H16 
CONECT      C12    4 O12  C11  C13  H17 
CONECT      C13    3 C12  C14  H18 
CONECT      OP1    1 P   
CONECT      C14    3 C10  C13  H21 
CONECT      O3'    2 C3'  H23 
CONECT      C5     3 C7   C4   C6  
CONECT      C4     3 N9   N3   C5  
CONECT      C2     3 N3   N2   N1  
CONECT      C6     3 O6   N1   C5  
CONECT      C4'    4 O4'  C5'  C3'  H24 
CONECT      C5'    4 O5'  C4'  H25  H26 
CONECT      C3'    4 C2'  O3'  C4'  H27 
CONECT      H1     1 C2' 
CONECT      H2     1 O2' 
CONECT      H3     1 C1' 
CONECT      H4     1 N10 
CONECT      H6     1 O11 
CONECT      H7     1 C8  
CONECT      H8     1 O12 
CONECT      H9     1 N2  
CONECT      H10    1 N2  
CONECT      H11    1 C9  
CONECT      H12    1 C9  
CONECT      H13    1 N1  
CONECT      H14    1 C10 
CONECT      H15    1 C11 
CONECT      H16    1 OP2 
CONECT      H17    1 C12 
CONECT      H18    1 C13 
CONECT      H21    1 C14 
CONECT      H23    1 O3' 
CONECT      H24    1 C4' 
CONECT      H25    1 C5' 
CONECT      H26    1 C5' 
CONECT      H27    1 C3' 
CONECT      OP3    2 P    HOP3
CONECT      HOP3   1 OP3 
END   
HET    56B             57
HETNAM     56B 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-y
HETNAM   2 56B l]amino}methyl)-7-(5-O-phosphono-beta-D-ribofuranosyl)-
HETNAM   3 56B 3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one
FORMUL      56B    C17 H24 N5 O10 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science