Structure based on 4amw

Ideal structure
Name: 2-oxo-1,2,dideoxy-5f-d-idopyranose
Formula: C6 H9 F O5
Weight: 180.131
SMILES: "OC[C]1(F)OCC(=O)[CH](O)[CH]1O"
Spacial conformation based on PDB 4amw
RESIDUE   5DI     21
CONECT      C1     4 C2   O5   H11C H12C
CONECT      C2     3 C1   O2   C3  
CONECT      O2     1 C2  
CONECT      C3     4 C2   O3   C4   H3C 
CONECT      O3     2 C3   H3O 
CONECT      C4     4 C3   O4   C5   H4C 
CONECT      O4     2 C4   H4O 
CONECT      C5     4 C4   O5   C6   F1  
CONECT      O5     2 C1   C5  
CONECT      C6     4 C5   O6   H61C H62C
CONECT      O6     2 C6   H6O 
CONECT      F1     1 C5  
CONECT      H11C   1 C1  
CONECT      H12C   1 C1  
CONECT      H3C    1 C3  
CONECT      H3O    1 O3  
CONECT      H4C    1 C4  
CONECT      H4O    1 O4  
CONECT      H61C   1 C6  
CONECT      H62C   1 C6  
CONECT      H6O    1 O6  
END   
HET    5DI             21
HETSYN     5DI 2-OXO-1,2,DIDEOXY-5F-D-IDOPYRANOSE; alpha-D-threo-hexo-
HETSYN   2 5DI 2,5-diulo-2,6-syl fluoride; D-threo-hexo-2,5-diulo-2,6-
HETSYN   3 5DI syl fluoride; threo-hexo-2,5-diulo-2,6-syl fluoride
HETNAM     5DI alpha-D-threo-hexo-2,5-diulo-2,6-pyranosyl fluoride
FORMUL      5DI    C6 H9 F1 O5

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science