Structure based on 4l46

Ideal structure
Name: 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1h-benzimidazole
Formula: C19 H21 F3 N6
Weight: 390.405
SMILES: "CCc1cncnc1N2CCN(CC2)Cc3[nH]c4ccc(cc4n3)C(F)(F)F"
Spacial conformation based on PDB 4l46.
Also present in other 7 PDB entries.
RESIDUE   5FI     49
CONECT      C4     3 C5   N3   NBA 
CONECT      C5     3 C4   C6   CAJ 
CONECT      C6     3 C5   N1   H1  
CONECT      N1     2 C6   C2  
CONECT      N3     2 C4   C2  
CONECT      FAB    1 CBB 
CONECT      CBB    4 FAB  FAC  FAD  CAU 
CONECT      FAC    1 CBB 
CONECT      FAD    1 CBB 
CONECT      CAU    3 CBB  CAE  CAI 
CONECT      CAE    3 CAU  CAF  H2  
CONECT      CAF    3 CAE  CAY  H3  
CONECT      CAI    3 CAU  CAX  H4  
CONECT      CAX    3 CAI  CAY  NAR 
CONECT      CAY    3 CAF  CAX  NAS 
CONECT      NAS    3 CAY  CAV  H5  
CONECT      NAR    2 CAX  CAV 
CONECT      CAV    3 NAS  NAR  CAO 
CONECT      CAO    4 CAV  NAZ  H7   H8  
CONECT      NAZ    3 CAO  CAL  CAK 
CONECT      CAL    4 NAZ  CAN  H10  H11 
CONECT      CAN    4 CAL  NBA  H12  H13 
CONECT      CAK    4 NAZ  CAM  H14  H15 
CONECT      CAM    4 CAK  NBA  H16  H17 
CONECT      NBA    3 C4   CAN  CAM 
CONECT      CAJ    4 C5   CAA  H18  H19 
CONECT      CAA    4 CAJ  H20  H21  H22 
CONECT      C2     3 N1   N3   H23 
CONECT      H1     1 C6  
CONECT      H2     1 CAE 
CONECT      H3     1 CAF 
CONECT      H4     1 CAI 
CONECT      H7     1 CAO 
CONECT      H8     1 CAO 
CONECT      H10    1 CAL 
CONECT      H11    1 CAL 
CONECT      H12    1 CAN 
CONECT      H13    1 CAN 
CONECT      H14    1 CAK 
CONECT      H15    1 CAK 
CONECT      H16    1 CAM 
CONECT      H17    1 CAM 
CONECT      H18    1 CAJ 
CONECT      H19    1 CAJ 
CONECT      H20    1 CAA 
CONECT      H21    1 CAA 
CONECT      H22    1 CAA 
CONECT      H23    1 C2  
CONECT      H5     1 NAS 
END   
HET    5FI             49
HETNAM     5FI 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(
HETNAM   2 5FI trifluoromethyl)-1H-benzimidazole
FORMUL      5FI    C19 H21 F3 N6

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science