Structure based on 2kp4

Ideal structure
Name: 9-(2-deoxy-2-fluoro-5-o-phosphono-beta-d-arabinofuranosyl)-9h-purin-6-amine
Formula: C10 H13 F N5 O6 P
Weight: 349.212
SMILES: "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3F"
Spacial conformation based on PDB 2kp4.
Also present on 3g0q, 6mu4, 7z6k
RESIDUE   A5L     36
CONECT      F      1 C2' 
CONECT      P      4 O5'  OP1  OP2  OP3 
CONECT      N1     2 C2   C6  
CONECT      C2     3 N1   N3   H2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   C5   N9  
CONECT      C5     3 C4   C6   N7  
CONECT      C6     3 N1   C5   N6  
CONECT      N6     3 C6   HN6  HN6A
CONECT      N7     2 C5   C8  
CONECT      C8     3 N7   N9   H8  
CONECT      N9     3 C4   C8   C1' 
CONECT      C1'    4 N9   C2'  O4'  H1' 
CONECT      C2'    4 F    C1'  C3'  H2' 
CONECT      C3'    4 C2'  O3'  C4'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      C5'    4 C4'  O5'  H5'  H5'A
CONECT      O5'    2 P    C5' 
CONECT      OP1    2 P    HOP1
CONECT      OP2    1 P   
CONECT      OP3    2 P    HOP3
CONECT      H2     1 C2  
CONECT      H8     1 C8  
CONECT      HN6    1 N6  
CONECT      HN6A   1 N6  
CONECT      H5'    1 C5' 
CONECT      H5'A   1 C5' 
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      HO3'   1 O3' 
CONECT      HOP1   1 OP1 
CONECT      HOP3   1 OP3 
END   
HET    A5L             36
HETSYN     A5L 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL ADENINE-5'-PHOSPHA
HETSYN   2 A5L TE
HETNAM     A5L 9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranos
HETNAM   2 A5L yl)-9H-purin-6-amine
FORMUL      A5L    C10 H13 F1 N5 O6 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science