Structure based on 3dj5

Ideal structure
Name: 3-({3-[(6-amino-5-bromopyrimidin-4-yl)sulfanyl]propanoyl}amino)-4-methoxy-n-phenylbenzamide
Formula: C21 H20 Br N5 O3 S
Weight: 502.384
SMILES: "COc1ccc(cc1NC(=O)CCSc2ncnc(N)c2Br)C(=O)Nc3ccccc3"
Spacial conformation based on PDB 3dj5
RESIDUE   AK5     51
CONECT      C28    3 C27  C23  H28 
CONECT      C27    3 C28  C26  H27 
CONECT      C26    3 C27  C25  H26 
CONECT      C24    3 C23  C25  H24 
CONECT      C23    3 C28  C24  N22 
CONECT      C16    3 C17  C15  H16 
CONECT      C17    3 C16  C18  H17 
CONECT      O19    2 C18  C29 
CONECT      C20    3 C15  O21  N22 
CONECT      C15    3 C16  C20  C14 
CONECT      C13    3 C14  N11  C18 
CONECT      C14    3 C15  C13  H14 
CONECT      C9     3 N8   N10  H9  
CONECT      C7     3 C6   N31  N8  
CONECT      C5     3 C6   N10  S4  
CONECT      C6     3 C7   C5   BR30
CONECT      C3     3 C1   O12  N11 
CONECT      C2     4 C1   S4   H2   H2A 
CONECT      C1     4 C3   C2   H1   H1A 
CONECT      BR30   1 C6  
CONECT      N31    3 C7   HN31 HN3A
CONECT      N8     2 C9   C7  
CONECT      N10    2 C9   C5  
CONECT      S4     2 C5   C2  
CONECT      O12    1 C3  
CONECT      N11    3 C13  C3   HN11
CONECT      C18    3 C17  O19  C13 
CONECT      C29    4 O19  H29  H29A H29B
CONECT      O21    1 C20 
CONECT      N22    3 C23  C20  HN22
CONECT      C25    3 C26  C24  H25 
CONECT      H28    1 C28 
CONECT      H27    1 C27 
CONECT      H26    1 C26 
CONECT      H24    1 C24 
CONECT      H16    1 C16 
CONECT      H17    1 C17 
CONECT      H14    1 C14 
CONECT      H9     1 C9  
CONECT      H2     1 C2  
CONECT      H2A    1 C2  
CONECT      H1     1 C1  
CONECT      H1A    1 C1  
CONECT      HN31   1 N31 
CONECT      HN3A   1 N31 
CONECT      HN11   1 N11 
CONECT      H29    1 C29 
CONECT      H29A   1 C29 
CONECT      H29B   1 C29 
CONECT      HN22   1 N22 
CONECT      H25    1 C25 
END   
HET    AK5             51
HETNAM     AK5 3-({3-[(6-amino-5-bromopyrimidin-4-yl)sulfanyl]propanoy
HETNAM   2 AK5 l}amino)-4-methoxy-N-phenylbenzamide
FORMUL      AK5    C21 H20 Br1 N5 O3 S1

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science