Structure based on 4kcf |
Ideal structure |
|
| Name: [(2r,4s,6r)-4-azanyl-4,6-dimethyl-5,5-bis(oxidanyl)oxan-2-yl] [[(2r,3s,5r)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate |
| Formula: C17 H29 N3 O14 P2 |
| Weight: 561.371 |
| SMILES: "C[CH]1O[CH](C[C](C)(N)C1(O)O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O" |
| Spacial conformation based on PDB
4kcf |
RESIDUE AKM 65
CONECT O2P 2 P H1
CONECT P 4 O2P O1P OPP O5'
CONECT O1P 1 P
CONECT OPP 2 P P2
CONECT P2 4 OPP O3P O1 O4P
CONECT O3P 1 P2
CONECT O1 2 P2 C1
CONECT C1 4 O1 C2 O5 H2
CONECT C2 4 C1 C3 H3 H4
CONECT C3 4 C2 C3M N3 C4
CONECT C3M 4 C3 H5 H6 H7
CONECT N3 3 C3 H8 H9
CONECT C4 4 C3 O4A O4B C5
CONECT O4A 2 C4 H11
CONECT O4B 2 C4 H12
CONECT C5 4 C4 C6 O5 H13
CONECT C6 4 C5 H14 H15 H16
CONECT O5 2 C1 C5
CONECT O4P 2 P2 H17
CONECT O5' 2 P C5'
CONECT C5' 4 O5' C4' H18 H19
CONECT C4' 4 C5' C3' O4' H20
CONECT C3' 4 C4' O3' C2' H21
CONECT O3' 2 C3' H22
CONECT C2' 4 C3' C1' H23 H24
CONECT C1' 4 C2' O4' N11 H25
CONECT O4' 2 C4' C1'
CONECT N11 3 C1' C21 C61
CONECT C21 3 N11 O21 N31
CONECT O21 1 C21
CONECT N31 3 C21 C41 H26
CONECT C41 3 N31 O41 C51
CONECT O41 1 C41
CONECT C51 3 C41 C5A C61
CONECT C5A 4 C51 H27 H28 H29
CONECT C61 3 N11 C51 H30
CONECT H1 1 O2P
CONECT H2 1 C1
CONECT H3 1 C2
CONECT H4 1 C2
CONECT H5 1 C3M
CONECT H6 1 C3M
CONECT H7 1 C3M
CONECT H8 1 N3
CONECT H9 1 N3
CONECT H11 1 O4A
CONECT H12 1 O4B
CONECT H13 1 C5
CONECT H14 1 C6
CONECT H15 1 C6
CONECT H16 1 C6
CONECT H17 1 O4P
CONECT H18 1 C5'
CONECT H19 1 C5'
CONECT H20 1 C4'
CONECT H21 1 C3'
CONECT H22 1 O3'
CONECT H23 1 C2'
CONECT H24 1 C2'
CONECT H25 1 C1'
CONECT H26 1 N31
CONECT H27 1 C5A
CONECT H28 1 C5A
CONECT H29 1 C5A
CONECT H30 1 C61
END
HET AKM 65
HETSYN AKM dTDP-3-amino-2,3,6-trideoxy-4-keto-3-methyl-D-glucose (
HETSYN 2 AKM hydrated at C4)
HETNAM AKM [(2R,4S,6R)-4-azanyl-4,6-dimethyl-5,5-bis(oxidanyl)oxan
HETNAM 2 AKM -2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)p
HETNAM 3 AKM yrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-
HETNAM 4 AKM phosphoryl] hydrogen phosphate
FORMUL AKM C17 H29 N3 O14 P2
MONOMER page