Structure based on 1g9q

Ideal structure
Name: adenosine-5-diphosphoribose
Formula: C15 H23 N5 O14 P2
Weight: 559.316
SMILES: "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O"
Spacial conformation based on PDB 1g9q.
Also present in other 97 PDB entries.
RESIDUE   APR     59
CONECT      N1     2 C2   C6  
CONECT      C2     3 N1   N3   H2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   C5   N9  
CONECT      C5     3 C4   C6   N7  
CONECT      C6     3 N1   C5   N6  
CONECT      N6     3 C6   H61  H62 
CONECT      N7     2 C5   C8  
CONECT      C8     3 N7   N9   H8  
CONECT      N9     3 C4   C8   C1' 
CONECT      C1'    4 N9   C2'  O4'  H'1 
CONECT      C2'    4 C1'  O2'  C3'  H'2 
CONECT      O2'    2 C2'  HO'2
CONECT      C3'    4 C2'  O3'  C4'  H'3 
CONECT      O3'    2 C3'  HO'3
CONECT      O4'    2 C1'  C4' 
CONECT      C4'    4 C3'  O4'  C5'  H'4 
CONECT      C5'    4 C4'  O5'  H5'1 H5'2
CONECT      O5'    2 C5'  PA  
CONECT      PA     4 O5'  O1A  O2A  O3A 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   HOA2
CONECT      O3A    2 PA   PB  
CONECT      PB     4 O3A  O1B  O2B  O5D 
CONECT      O1B    1 PB  
CONECT      O2B    2 PB   HOB2
CONECT      O5D    2 PB   C5D 
CONECT      C5D    4 O5D  C4D  H5R1 H5R2
CONECT      O4D    2 C1D  C4D 
CONECT      O1D    2 C1D  HOR1
CONECT      C1D    4 O4D  O1D  C2D  HR'1
CONECT      O2D    2 C2D  HOR2
CONECT      C2D    4 C1D  O2D  C3D  HR'2
CONECT      O3D    2 C3D  HOR3
CONECT      C3D    4 C2D  O3D  C4D  HR'3
CONECT      C4D    4 C5D  O4D  C3D  HR'4
CONECT      H2     1 C2  
CONECT      H61    1 N6  
CONECT      H62    1 N6  
CONECT      H8     1 C8  
CONECT      H'1    1 C1' 
CONECT      H'2    1 C2' 
CONECT      HO'2   1 O2' 
CONECT      H'3    1 C3' 
CONECT      HO'3   1 O3' 
CONECT      H'4    1 C4' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      HOA2   1 O2A 
CONECT      HOB2   1 O2B 
CONECT      H5R1   1 C5D 
CONECT      H5R2   1 C5D 
CONECT      HOR1   1 O1D 
CONECT      HR'1   1 C1D 
CONECT      HOR2   1 O2D 
CONECT      HR'2   1 C2D 
CONECT      HOR3   1 O3D 
CONECT      HR'3   1 C3D 
CONECT      HR'4   1 C4D 
END   
HET    APR             59
HETNAM     APR ADENOSINE-5-DIPHOSPHORIBOSE
FORMUL      APR    C15 H23 N5 O14 P2

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science