Structure based on 2wps | Ideal structure |
|
Name: [(2r,3s,4r,5r)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2r,3s,4r,5s)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate |
Formula: C15 H23 N5 O14 P2 |
Weight: 559.316 |
SMILES: "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O" |
Spacial conformation based on PDB
2wps. Also present in other
119 PDB entries. |
RESIDUE AR6 59
CONECT N1 2 C2 C6
CONECT C2 3 N1 N3 H2
CONECT N3 2 C2 C4
CONECT C4 3 N3 C5 N9
CONECT C5 3 C4 C6 N7
CONECT C6 3 N1 C5 N6
CONECT N6 3 C6 HN6 HN6A
CONECT N7 2 C5 C8
CONECT C8 3 N7 N9 H8
CONECT N9 3 C4 C8 C1'
CONECT PA 4 O1A O2A O3A O5'
CONECT PB 4 O1B O2B O3A O5D
CONECT C1' 4 N9 C2' O4' H1'
CONECT O1A 2 PA H1A
CONECT O1B 2 PB H1B
CONECT C1D 4 O1D C2D O4D H1D
CONECT O1D 2 C1D HD1
CONECT C2' 4 C1' O2' C3' H2'
CONECT O2' 2 C2' HO2'
CONECT O2A 1 PA
CONECT O2B 1 PB
CONECT C2D 4 C1D O2D C3D H2D
CONECT O2D 2 C2D HO2D
CONECT C3' 4 C2' O3' C4' H3'
CONECT O3' 2 C3' HO3'
CONECT O3A 2 PA PB
CONECT C3D 4 C2D O3D C4D H3D
CONECT O3D 2 C3D HO3D
CONECT C4' 4 C3' O4' C5' H4'
CONECT O4' 2 C1' C4'
CONECT C4D 4 C3D O4D C5D H4D
CONECT O4D 2 C1D C4D
CONECT C5' 4 C4' O5' H5' H5'A
CONECT O5' 2 PA C5'
CONECT C5D 4 C4D O5D H5D H5DA
CONECT O5D 2 PB C5D
CONECT H2 1 C2
CONECT HN6 1 N6
CONECT HN6A 1 N6
CONECT H8 1 C8
CONECT H1' 1 C1'
CONECT H1D 1 C1D
CONECT H2' 1 C2'
CONECT HO2' 1 O2'
CONECT H2D 1 C2D
CONECT HO2D 1 O2D
CONECT H3' 1 C3'
CONECT HO3' 1 O3'
CONECT H3D 1 C3D
CONECT HO3D 1 O3D
CONECT H4' 1 C4'
CONECT H4D 1 C4D
CONECT H5' 1 C5'
CONECT H5'A 1 C5'
CONECT H5D 1 C5D
CONECT H5DA 1 C5D
CONECT H1A 1 O1A
CONECT H1B 1 O1B
CONECT HD1 1 O1D
END
HET AR6 59
HETSYN AR6 Adenosine-5-Diphosphoribose
HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOL
HETNAM 2 AR6 AN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROX
HETNAM 3 AR6 YOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
FORMUL AR6 C15 H23 N5 O14 P2