Structure based on 2rde | Ideal structure |
|
Formula: C20 H24 N10 O14 P2 |
Weight: 690.411 |
SMILES: "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]4[CH]3O)n6cnc7C(=O)NC(=Nc67)N" |
Spacial conformation based on PDB
2rde. Also present in other
120 PDB entries. |
RESIDUE C2E 70
CONECT P1 4 O2P O1P O5' O3A
CONECT O2P 2 P1 HO2P
CONECT O1P 1 P1
CONECT O5' 2 P1 C5'
CONECT C5' 4 O5' C4' H5'1 H5'2
CONECT C4' 4 C5' O4' C3' H4'
CONECT O4' 2 C4' C1'
CONECT C3' 4 C4' O3' C2' H3'
CONECT O3' 2 C3' P11
CONECT C2' 4 C3' O2' C1' H2'
CONECT O2' 2 C2' HO2'
CONECT C1' 4 O4' C2' N9 H1'
CONECT N9 3 C1' C8 C4
CONECT C8 3 N9 N7 H8
CONECT N7 2 C8 C5
CONECT C5 3 N7 C6 C4
CONECT C6 3 C5 O6 N1
CONECT O6 1 C6
CONECT N1 3 C6 C2 HN1
CONECT C2 3 N1 N2 N3
CONECT N2 3 C2 HN21 HN22
CONECT N3 2 C2 C4
CONECT C4 3 N9 C5 N3
CONECT P11 4 O3' O21 O11 O5A
CONECT O21 2 P11 HO21
CONECT O11 1 P11
CONECT O5A 2 P11 C5A
CONECT C5A 4 O5A C4A H511 H512
CONECT C4A 4 C5A O4A C3A H4A
CONECT O4A 2 C4A C1A
CONECT C3A 4 C4A O3A C2A H3A
CONECT O3A 2 P1 C3A
CONECT C2A 4 C3A O2A C1A H2A
CONECT O2A 2 C2A HO2A
CONECT C1A 4 O4A C2A N91 H1A
CONECT N91 3 C1A C81 C41
CONECT C81 3 N91 N71 H81
CONECT N71 2 C81 C51
CONECT C51 3 N71 C61 C41
CONECT C61 3 C51 O61 N11
CONECT O61 1 C61
CONECT N11 3 C61 C21 HN11
CONECT C21 3 N11 N21 N31
CONECT N21 3 C21 HN24 HN23
CONECT N31 2 C21 C41
CONECT C41 3 N91 C51 N31
CONECT HO2P 1 O2P
CONECT H5'1 1 C5'
CONECT H5'2 1 C5'
CONECT H4' 1 C4'
CONECT H3' 1 C3'
CONECT H2' 1 C2'
CONECT HO2' 1 O2'
CONECT H1' 1 C1'
CONECT H8 1 C8
CONECT HN1 1 N1
CONECT HN21 1 N2
CONECT HN22 1 N2
CONECT HO21 1 O21
CONECT H511 1 C5A
CONECT H512 1 C5A
CONECT H4A 1 C4A
CONECT H3A 1 C3A
CONECT H2A 1 C2A
CONECT HO2A 1 O2A
CONECT H1A 1 C1A
CONECT H81 1 C81
CONECT HN11 1 N11
CONECT HN24 1 N21
CONECT HN23 1 N21
END
HET C2E 70
HETSYN C2E c-di-GMP; Cyclic diguanosine monophosphate
HETNAM C2E 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12
HETNAM 2 C2E -tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:
HETNAM 3 C2E 3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9
HETNAM 4 C2E -diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
FORMUL C2E C20 H24 N10 O14 P2