Structure based on 1dct

Ideal structure
Name: 4-thio,5-fluoro,5-methyl-2'-deoxy-cytidine-5'-monophosphate
Formula: C10 H15 F N3 O7 P S
Weight: 371.279
SMILES: "C[C]1(F)C(=N)NC(=O)N([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C1=S"
Spacial conformation based on PDB 1dct.
Also present in other 9 PDB entries.
RESIDUE   C49     38
CONECT      P      4 O1P  O2P  O3P  O5' 
CONECT      O1P    1 P   
CONECT      O2P    2 P    H2P 
CONECT      O3P    2 P    H3P 
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  HA  
CONECT      C2'    4 C3'  C1'  H2'1 H2'2
CONECT      C1'    4 O4'  C2'  N1   H1' 
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   H3  
CONECT      C4     3 N3   N4   C5  
CONECT      N4     2 C4   HN1 
CONECT      C5     4 C4   C6   CM5  F   
CONECT      C6     3 N1   C5   SG  
CONECT      CM5    4 C5   HM51 HM52 HM53
CONECT      F      1 C5  
CONECT      SG     1 C6  
CONECT      H2P    1 O2P 
CONECT      H3P    1 O3P 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      HA     1 O3' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H1'    1 C1' 
CONECT      H3     1 N3  
CONECT      HM51   1 CM5 
CONECT      HM52   1 CM5 
CONECT      HM53   1 CM5 
CONECT      HN1    1 N4  
END   
HET    C49             38
HETNAM     C49 4-THIO,5-FLUORO,5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSP
HETNAM   2 C49 HATE
FORMUL      C49    C10 H15 F1 N3 O7 P1 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science