Structure based on 1jzx

Ideal structure
Name: clindamycin
Formula: C18 H33 Cl N2 O5 S
Weight: 424.983
SMILES: "CCC[CH]1C[CH](N(C)C1)C(=O)N[CH]([CH](C)Cl)[CH]2O[CH](SC)[CH](O)[CH](O)[CH]2O"
Spacial conformation based on PDB 1jzx.
Also present on 1yjn, 3jz0, 8cgd
RESIDUE   CLY     60
CONECT      O4     2 C1   HO4 
CONECT      C1     4 O4   C2   C5   H1  
CONECT      C2     4 C1   C3   O6   H2  
CONECT      C3     4 C2   C4   O7   H3  
CONECT      C4     4 C3   O5   C7   H4  
CONECT      O5     2 C4   C5  
CONECT      C5     4 C1   O5   S1   H5  
CONECT      O6     2 C2   HO6 
CONECT      O7     2 C3   HO7 
CONECT      S1     2 C5   C6  
CONECT      C6     4 S1   H61  H62  H63 
CONECT      C7     4 C4   C8   N1   H7  
CONECT      C8     4 C7   C9   CL1  H8  
CONECT      C9     4 C8   H91  H92  H93 
CONECT      CL1    1 C8  
CONECT      N1     3 C7   C10  HN1 
CONECT      C10    3 N1   O8   C11 
CONECT      O8     1 C10 
CONECT      C11    4 C10  C12  N2   H11 
CONECT      C12    4 C11  C13  H121 H122
CONECT      C13    4 C12  C14  C16  H13 
CONECT      C14    4 C13  N2   H141 H142
CONECT      N2     3 C11  C14  C15 
CONECT      C15    4 N2   H151 H152 H153
CONECT      C16    4 C13  C17  H161 H162
CONECT      C17    4 C16  C18  H171 H172
CONECT      C18    4 C17  H181 H182 H183
CONECT      HO4    1 O4  
CONECT      H1     1 C1  
CONECT      H2     1 C2  
CONECT      H3     1 C3  
CONECT      H4     1 C4  
CONECT      H5     1 C5  
CONECT      HO6    1 O6  
CONECT      HO7    1 O7  
CONECT      H61    1 C6  
CONECT      H62    1 C6  
CONECT      H63    1 C6  
CONECT      H7     1 C7  
CONECT      H8     1 C8  
CONECT      H91    1 C9  
CONECT      H92    1 C9  
CONECT      H93    1 C9  
CONECT      HN1    1 N1  
CONECT      H11    1 C11 
CONECT      H121   1 C12 
CONECT      H122   1 C12 
CONECT      H13    1 C13 
CONECT      H141   1 C14 
CONECT      H142   1 C14 
CONECT      H151   1 C15 
CONECT      H152   1 C15 
CONECT      H153   1 C15 
CONECT      H161   1 C16 
CONECT      H162   1 C16 
CONECT      H171   1 C17 
CONECT      H172   1 C17 
CONECT      H181   1 C18 
CONECT      H182   1 C18 
CONECT      H183   1 C18 
END   
HET    CLY             60
HETNAM     CLY CLINDAMYCIN
FORMUL      CLY    C18 H33 Cl1 N2 O5 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science