Structure based on 1f3f

Ideal structure
Name: 2',3'-dehydro-2',3'-deoxy-thymidine 5'-diphosphate
Formula: C10 H14 N2 O10 P2
Weight: 384.173
SMILES: "CC1=CN([CH]2O[CH](CO[P](O)(=O)O[P](O)(O)=O)C=C2)C(=O)NC1=O"
Spacial conformation based on PDB 1f3f
RESIDUE   D4D     38
CONECT      PA     4 O1A  O2A  O3A  O5' 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   H2AO
CONECT      O3A    2 PA   PB  
CONECT      PB     4 O3A  O1B  O2B  O3B 
CONECT      O1B    2 PB   H1BO
CONECT      O2B    1 PB  
CONECT      O3B    2 PB   H3BO
CONECT      O5'    2 PA   C5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4'C
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    3 C4'  C2'  H3'C
CONECT      C2'    3 C3'  C1'  H2'C
CONECT      C1'    4 O4'  C2'  N1   H1'C
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C4     3 N3   O4   C5  
CONECT      O4     1 C4  
CONECT      C5     3 C4   C5M  C6  
CONECT      C5M    4 C5   H5M1 H5M2 H5M3
CONECT      C6     3 N1   C5   H66 
CONECT      H2AO   1 O2A 
CONECT      H1BO   1 O1B 
CONECT      H3BO   1 O3B 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'C   1 C4' 
CONECT      H3'C   1 C3' 
CONECT      H2'C   1 C2' 
CONECT      H1'C   1 C1' 
CONECT      HN3    1 N3  
CONECT      H5M1   1 C5M 
CONECT      H5M2   1 C5M 
CONECT      H5M3   1 C5M 
CONECT      H66    1 C6  
HET    D4D             38
FORMUL      D4D    C10 H14 N2 O10 P2

uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science