Structure based on 1z4q

Ideal structure
Name: [(5r)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2h)-yl)-2,5-dihydrofuran-2-yl]methyl dihydrogen phosphate
Formula: C10 H13 N2 O7 P
Weight: 304.193
SMILES: "CC1=CN([CH]2O[CH](CO[P](O)(O)=O)C=C2)C(=O)NC1=O"
Spacial conformation based on PDB 1z4q.
Also present on 6wpf
RESIDUE   D4M     33
CONECT      OP2    2 P    HOP2
CONECT      P      4 OP2  OP1  OP3  O5' 
CONECT      OP1    1 P   
CONECT      OP3    2 P    HOP3
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'  H5''
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    3 C4'  C2'  H3' 
CONECT      C2'    3 C3'  C1'  H2' 
CONECT      C1'    4 O4'  C2'  N1   H1' 
CONECT      N1     3 C1'  C6   C2  
CONECT      C6     3 N1   C5   H6  
CONECT      C5     3 C6   C5M  C4  
CONECT      C5M    4 C5   H71  H72  H73 
CONECT      C4     3 C5   O4   N3  
CONECT      O4     1 C4  
CONECT      N3     3 C4   C2   H3  
CONECT      C2     3 N1   N3   O2  
CONECT      O2     1 C2  
CONECT      HOP2   1 OP2 
CONECT      HOP3   1 OP3 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      H2'    1 C2' 
CONECT      H1'    1 C1' 
CONECT      H6     1 C6  
CONECT      H71    1 C5M 
CONECT      H72    1 C5M 
CONECT      H73    1 C5M 
CONECT      H3     1 N3  
END   
HET    D4M             33
HETSYN     D4M 2',3'-DIDEOXY-2',3-DIDEHYDROTHYMIDINE 5'-MONOPHOSPHATE;
HETSYN   2 D4M  2',3'-DEHYDRO-2',3'-DEOXY-THYMIDINE 5'-MONOPHOSPHATE
HETNAM     D4M [(5R)-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-
HETNAM   2 D4M YL)-2,5-DIHYDROFURAN-2-YL]METHYL DIHYDROGEN PHOSPHATE
FORMUL      D4M    C10 H13 N2 O7 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science