Structure based on 1rn8

Ideal structure
Name: 2'-deoxyuridine 5'-alpha,beta-imido-triphosphate
Formula: C9 H16 N3 O13 P3
Weight: 467.157
SMILES: "O[CH]1C[CH](O[CH]1CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O"
Spacial conformation based on PDB 1rn8.
Also present in other 76 PDB entries.
RESIDUE   DUP     44
CONECT      O4     1 C4  
CONECT      C4     3 O4   C5   N3  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 C5   N1   H6  
CONECT      N3     3 C4   C2   HN3 
CONECT      C2     3 N3   O2   N1  
CONECT      O2     1 C2  
CONECT      N1     3 C6   C2   C1' 
CONECT      C1'    4 N1   C2'  O4'  H1' 
CONECT      C2'    4 C1'  C3'  H2'1 H2'2
CONECT      C3'    4 C2'  O3'  C4'  H1  
CONECT      O3'    2 C3'  H3' 
CONECT      O4'    2 C1'  C4' 
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      C5'    4 C4'  O5'  H5'1 H5'2
CONECT      O5'    2 C5'  PA  
CONECT      PA     4 O5'  O1A  O2A  N3A 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   H2A 
CONECT      N3A    3 PA   PB   H3A 
CONECT      PB     4 N3A  O1B  O2B  O3B 
CONECT      O1B    1 PB  
CONECT      O2B    2 PB   H2B 
CONECT      O3B    2 PB   PG  
CONECT      PG     4 O3B  O2G  O1G  O3G 
CONECT      O2G    1 PG  
CONECT      O1G    2 PG   H1G 
CONECT      O3G    2 PG   H3G 
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      HN3    1 N3  
CONECT      H1'    1 C1' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H1     1 C3' 
CONECT      H3'    1 O3' 
CONECT      H4'    1 C4' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H2A    1 O2A 
CONECT      H3A    1 N3A 
CONECT      H2B    1 O2B 
CONECT      H1G    1 O1G 
CONECT      H3G    1 O3G 
END   
HET    DUP             44
HETNAM     DUP 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
FORMUL      DUP    C9 H16 N3 O13 P3

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science