Structure based on 1bdu

Ideal structure
Name: 2'-deoxyuridine
Formula: C9 H12 N2 O5
Weight: 228.202
SMILES: "OC[CH]1O[CH](C[CH]1O)N2C=CC(=O)NC2=O"
Spacial conformation based on PDB 1bdu.
Also present in other 16 PDB entries.
RESIDUE   DUR     28
CONECT      N1     3 C2   C6   C1' 
CONECT      C2     3 N1   N3   O2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C4     3 N3   C5   O4  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 N1   C5   H6  
CONECT      O2     1 C2  
CONECT      O4     1 C4  
CONECT      C1'    4 N1   C2'  O4'  H1' 
CONECT      C2'    4 C1'  C3'  H2'1 H2'2
CONECT      C3'    4 C2'  C4'  O3'  H3' 
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O3'    2 C3'  HO3'
CONECT      O4'    2 C1'  C4' 
CONECT      C5'    4 C4'  O5'  H5'1 H5'2
CONECT      O5'    2 C5'  HO5'
CONECT      HN3    1 N3  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      H1'    1 C1' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      HO3'   1 O3' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      HO5'   1 O5' 
END   
HET    DUR             28
HETNAM     DUR 2'-DEOXYURIDINE
FORMUL      DUR    C9 H12 N2 O5

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science