Structure based on 4oqx

Ideal structure
Name: 1-(2-deoxy-2-methyl-beta-d-arabinofuranosyl)-5-ethynylpyrimidine-2,4(1h,3h)-dione
Formula: C12 H14 N2 O5
Weight: 266.250
SMILES: "C[CH]1[CH](O)[CH](CO)O[CH]1N2C=C(C#C)C(=O)NC2=O"
Spacial conformation based on PDB 4oqx
RESIDUE   EDV     33
CONECT      O01    2 C03  H1  
CONECT      C03    4 O01  C06  H2   H3  
CONECT      C06    4 C03  O08  C09  H4  
CONECT      O08    2 C06  C16 
CONECT      C09    4 C06  O11  C13  H5  
CONECT      O11    2 C09  H6  
CONECT      C13    4 C09  C15  C16  H7  
CONECT      C15    4 C13  H8   H9   H10 
CONECT      C16    4 O08  C13  N18  H11 
CONECT      N18    3 C16  C19  C26 
CONECT      C19    3 N18  O20  N21 
CONECT      O20    1 C19 
CONECT      N21    3 C19  C23  H12 
CONECT      C23    3 N21  O24  C25 
CONECT      O24    1 C23 
CONECT      C25    3 C23  C26  C28 
CONECT      C26    3 N18  C25  H13 
CONECT      C28    2 C25  C29 
CONECT      C29    2 C28  H14 
CONECT      H1     1 O01 
CONECT      H2     1 C03 
CONECT      H3     1 C03 
CONECT      H4     1 C06 
CONECT      H5     1 C09 
CONECT      H6     1 O11 
CONECT      H7     1 C13 
CONECT      H8     1 C15 
CONECT      H9     1 C15 
CONECT      H10    1 C15 
CONECT      H11    1 C16 
CONECT      H12    1 N21 
CONECT      H13    1 C26 
CONECT      H14    1 C29 
END   
HET    EDV             33
HETSYN     EDV (2'S)-2'-DEOXY-2'-METHYL-5-ETHYNYLURIDINE
HETNAM     EDV 1-(2-deoxy-2-methyl-beta-D-arabinofuranosyl)-5-ethynylp
HETNAM   2 EDV yrimidine-2,4(1H,3H)-dione
FORMUL      EDV    C12 H14 N2 O5

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science